Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.68■□□□□ 0.42
MSX2P35548 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.68■□□□□ 0.42
MSX2P35548 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
MSX2P35548 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSX2P35548 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.68■□□□□ 0.42
MSX2P35548 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
MSX2P35548 AL357033.4-201ENST00000617703 1807 ntBASIC17.68■□□□□ 0.42
MSX2P35548 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX2P35548 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
MSX2P35548 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSX2P35548 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.67■□□□□ 0.42
MSX2P35548 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX2P35548 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX2P35548 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX2P35548 METTL26-203ENST00000397664 604 ntTSL 2 BASIC17.67■□□□□ 0.42
MSX2P35548 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
MSX2P35548 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.67■□□□□ 0.42
MSX2P35548 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.67■□□□□ 0.42
MSX2P35548 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.67■□□□□ 0.42
MSX2P35548 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
MSX2P35548 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSX2P35548 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX2P35548 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSX2P35548 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
MSX2P35548 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
MSX2P35548 AC141586.5-201ENST00000624546 2050 ntBASIC17.67■□□□□ 0.42
MSX2P35548 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX2P35548 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.66■□□□□ 0.42
MSX2P35548 AC092368.3-202ENST00000574180 1591 ntBASIC17.66■□□□□ 0.42
MSX2P35548 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.66■□□□□ 0.42
MSX2P35548 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 AC022211.2-201ENST00000585075 2527 ntBASIC17.66■□□□□ 0.42
MSX2P35548 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
MSX2P35548 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.66■□□□□ 0.42
MSX2P35548 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 AC008894.3-201ENST00000624324 3103 ntBASIC17.66■□□□□ 0.42
MSX2P35548 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
MSX2P35548 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
MSX2P35548 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.66■□□□□ 0.42
MSX2P35548 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.66■□□□□ 0.42
MSX2P35548 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
MSX2P35548 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.66■□□□□ 0.42
MSX2P35548 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.66■□□□□ 0.42
MSX2P35548 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
MSX2P35548 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.66■□□□□ 0.42
MSX2P35548 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSX2P35548 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.65■□□□□ 0.42
MSX2P35548 AC008556.1-201ENST00000610908 2040 ntBASIC17.65■□□□□ 0.42
MSX2P35548 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.65■□□□□ 0.42
MSX2P35548 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
MSX2P35548 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
MSX2P35548 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
MSX2P35548 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC17.65■□□□□ 0.42
MSX2P35548 MIPEPP3-201ENST00000412105 444 ntBASIC17.65■□□□□ 0.42
MSX2P35548 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.65■□□□□ 0.42
MSX2P35548 SLC25A6P5-201ENST00000435663 894 ntBASIC17.65■□□□□ 0.42
MSX2P35548 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSX2P35548 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.65■□□□□ 0.42
MSX2P35548 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.65■□□□□ 0.42
MSX2P35548 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.65■□□□□ 0.42
MSX2P35548 HLA-A-209ENST00000638375 975 ntBASIC17.65■□□□□ 0.42
MSX2P35548 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX2P35548 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSX2P35548 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX2P35548 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX2P35548 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.65■□□□□ 0.42
MSX2P35548 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX2P35548 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
MSX2P35548 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.64■□□□□ 0.42
MSX2P35548 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
MSX2P35548 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
MSX2P35548 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.64■□□□□ 0.41
MSX2P35548 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.64■□□□□ 0.41
MSX2P35548 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 KRT8P41-201ENST00000533985 1514 ntBASIC17.64■□□□□ 0.41
MSX2P35548 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
MSX2P35548 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms