Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CIITAP33076 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.82■□□□□ 0.92
CIITAP33076 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CIITAP33076 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.82■□□□□ 0.92
CIITAP33076 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.82■□□□□ 0.92
CIITAP33076 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.82■□□□□ 0.92
CIITAP33076 AL358472.4-201ENST00000633140 710 ntBASIC20.82■□□□□ 0.92
CIITAP33076 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.82■□□□□ 0.92
CIITAP33076 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CIITAP33076 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CIITAP33076 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CIITAP33076 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CIITAP33076 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.81■□□□□ 0.92
CIITAP33076 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CIITAP33076 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CIITAP33076 AC126763.1-201ENST00000552015 2118 ntBASIC20.81■□□□□ 0.92
CIITAP33076 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CIITAP33076 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CIITAP33076 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.81■□□□□ 0.92
CIITAP33076 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.81■□□□□ 0.92
CIITAP33076 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CIITAP33076 PCED1CP-201ENST00000419887 785 ntBASIC20.81■□□□□ 0.92
CIITAP33076 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.81■□□□□ 0.92
CIITAP33076 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.81■□□□□ 0.92
CIITAP33076 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CIITAP33076 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CIITAP33076 KRT89P-201ENST00000620027 1478 ntBASIC20.81■□□□□ 0.92
CIITAP33076 AC087289.5-201ENST00000586076 3175 ntBASIC20.81■□□□□ 0.92
CIITAP33076 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CIITAP33076 RNF165-205ENST00000588679 2904 ntBASIC20.81■□□□□ 0.92
CIITAP33076 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.8■□□□□ 0.92
CIITAP33076 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CIITAP33076 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.8■□□□□ 0.92
CIITAP33076 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CIITAP33076 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CIITAP33076 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.8■□□□□ 0.92
CIITAP33076 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CIITAP33076 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CIITAP33076 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.8■□□□□ 0.92
CIITAP33076 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.8■□□□□ 0.92
CIITAP33076 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.8■□□□□ 0.92
CIITAP33076 AC091076.1-201ENST00000610741 619 ntBASIC20.8■□□□□ 0.92
CIITAP33076 AP000550.4-202ENST00000639755 178 ntBASIC20.8■□□□□ 0.92
CIITAP33076 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CIITAP33076 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CIITAP33076 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CIITAP33076 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CIITAP33076 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CIITAP33076 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.8■□□□□ 0.92
CIITAP33076 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CIITAP33076 AL162741.1-201ENST00000565563 1558 ntBASIC20.8■□□□□ 0.92
CIITAP33076 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CIITAP33076 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CIITAP33076 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CIITAP33076 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CIITAP33076 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.8■□□□□ 0.92
CIITAP33076 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CIITAP33076 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CIITAP33076 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CIITAP33076 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CIITAP33076 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.79■□□□□ 0.92
CIITAP33076 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.79■□□□□ 0.92
CIITAP33076 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CIITAP33076 AL645929.1-201ENST00000420084 975 ntBASIC20.79■□□□□ 0.92
CIITAP33076 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CIITAP33076 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.79■□□□□ 0.92
CIITAP33076 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.79■□□□□ 0.92
CIITAP33076 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CIITAP33076 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CIITAP33076 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
CIITAP33076 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CIITAP33076 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CIITAP33076 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
CIITAP33076 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CIITAP33076 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CIITAP33076 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.78■□□□□ 0.92
CIITAP33076 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.78■□□□□ 0.92
CIITAP33076 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CIITAP33076 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CIITAP33076 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
CIITAP33076 AC005082.1-201ENST00000413042 2259 ntBASIC20.78■□□□□ 0.92
CIITAP33076 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.78■□□□□ 0.92
CIITAP33076 AL024508.2-201ENST00000607749 1894 ntBASIC20.78■□□□□ 0.92
CIITAP33076 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CIITAP33076 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CIITAP33076 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.78■□□□□ 0.92
CIITAP33076 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.78■□□□□ 0.92
CIITAP33076 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
CIITAP33076 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.78■□□□□ 0.92
CIITAP33076 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CIITAP33076 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.78■□□□□ 0.92
CIITAP33076 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CIITAP33076 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CIITAP33076 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.78■□□□□ 0.92
CIITAP33076 TEN1-204ENST00000588202 862 ntTSL 3 BASIC20.78■□□□□ 0.92
CIITAP33076 AC024563.2-201ENST00000603282 481 ntBASIC20.78■□□□□ 0.92
CIITAP33076 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CIITAP33076 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.78■□□□□ 0.92
CIITAP33076 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.78■□□□□ 0.92
CIITAP33076 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms