Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX1P28360 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
MSX1P28360 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSX1P28360 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
MSX1P28360 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.95■□□□□ 0.3
MSX1P28360 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.95■□□□□ 0.3
MSX1P28360 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.95■□□□□ 0.3
MSX1P28360 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.95■□□□□ 0.3
MSX1P28360 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX1P28360 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.95■□□□□ 0.3
MSX1P28360 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX1P28360 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.95■□□□□ 0.3
MSX1P28360 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX1P28360 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.95■□□□□ 0.3
MSX1P28360 PCED1CP-201ENST00000419887 785 ntBASIC16.95■□□□□ 0.3
MSX1P28360 KRT18P23-201ENST00000435622 1283 ntBASIC16.95■□□□□ 0.3
MSX1P28360 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.95■□□□□ 0.3
MSX1P28360 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.95■□□□□ 0.3
MSX1P28360 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.95■□□□□ 0.3
MSX1P28360 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.95■□□□□ 0.3
MSX1P28360 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.95■□□□□ 0.3
MSX1P28360 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.95■□□□□ 0.3
MSX1P28360 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX1P28360 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.95■□□□□ 0.3
MSX1P28360 AC112497.1-201ENST00000624824 639 ntBASIC16.95■□□□□ 0.3
MSX1P28360 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
MSX1P28360 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX1P28360 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSX1P28360 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSX1P28360 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX1P28360 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
MSX1P28360 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.94■□□□□ 0.3
MSX1P28360 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.94■□□□□ 0.3
MSX1P28360 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
MSX1P28360 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
MSX1P28360 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
MSX1P28360 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.94■□□□□ 0.3
MSX1P28360 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 FAM86EP-206ENST00000510506 987 ntBASIC16.94■□□□□ 0.3
MSX1P28360 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.94■□□□□ 0.3
MSX1P28360 KRT126P-201ENST00000549467 1181 ntBASIC16.94■□□□□ 0.3
MSX1P28360 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.94■□□□□ 0.3
MSX1P28360 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.94■□□□□ 0.3
MSX1P28360 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.94■□□□□ 0.3
MSX1P28360 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.94■□□□□ 0.3
MSX1P28360 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.94■□□□□ 0.3
MSX1P28360 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.94■□□□□ 0.3
MSX1P28360 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.94■□□□□ 0.3
MSX1P28360 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
MSX1P28360 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX1P28360 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC16.94■□□□□ 0.3
MSX1P28360 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
MSX1P28360 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
MSX1P28360 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.94■□□□□ 0.3
MSX1P28360 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
MSX1P28360 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX1P28360 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
MSX1P28360 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX1P28360 IER3-202ENST00000376377 1350 ntBASIC16.93■□□□□ 0.3
MSX1P28360 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX1P28360 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX1P28360 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.93■□□□□ 0.3
MSX1P28360 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.93■□□□□ 0.3
MSX1P28360 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.93■□□□□ 0.3
MSX1P28360 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.93■□□□□ 0.3
MSX1P28360 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.93■□□□□ 0.3
MSX1P28360 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.93■□□□□ 0.3
MSX1P28360 AC009065.1-201ENST00000564055 1225 ntBASIC16.93■□□□□ 0.3
MSX1P28360 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.93■□□□□ 0.3
MSX1P28360 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX1P28360 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX1P28360 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSX1P28360 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX1P28360 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX1P28360 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.93■□□□□ 0.3
MSX1P28360 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX1P28360 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX1P28360 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
MSX1P28360 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.92■□□□□ 0.3
MSX1P28360 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
MSX1P28360 KRT18P48-201ENST00000434763 852 ntBASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms