Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
USF1P22415 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.68■□□□□ 0.1
USF1P22415 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 PRELID1P1-202ENST00000567272 903 ntBASIC15.68■□□□□ 0.1
USF1P22415 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.68■□□□□ 0.1
USF1P22415 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.68■□□□□ 0.1
USF1P22415 AC011498.5-201ENST00000592027 486 ntBASIC15.68■□□□□ 0.1
USF1P22415 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC15.68■□□□□ 0.1
USF1P22415 AC012313.10-201ENST00000623509 926 ntBASIC15.68■□□□□ 0.1
USF1P22415 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC15.68■□□□□ 0.1
USF1P22415 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
USF1P22415 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC15.68■□□□□ 0.1
USF1P22415 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC15.67■□□□□ 0.1
USF1P22415 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
USF1P22415 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC15.67■□□□□ 0.1
USF1P22415 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
USF1P22415 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC15.67■□□□□ 0.1
USF1P22415 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC15.67■□□□□ 0.1
USF1P22415 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 TSSC2-201ENST00000450217 709 ntBASIC15.67■□□□□ 0.1
USF1P22415 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC15.67■□□□□ 0.1
USF1P22415 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.67■□□□□ 0.1
USF1P22415 PRR29-207ENST00000580752 458 ntTSL 3 BASIC15.67■□□□□ 0.1
USF1P22415 NPAP1P7-201ENST00000613027 823 ntBASIC15.67■□□□□ 0.1
USF1P22415 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC15.67■□□□□ 0.1
USF1P22415 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC15.67■□□□□ 0.1
USF1P22415 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
USF1P22415 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.67■□□□□ 0.1
USF1P22415 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
USF1P22415 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC15.67■□□□□ 0.1
USF1P22415 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
USF1P22415 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC15.67■□□□□ 0.1
USF1P22415 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF1P22415 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
USF1P22415 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.66■□□□□ 0.1
USF1P22415 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
USF1P22415 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC15.66■□□□□ 0.1
USF1P22415 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC15.66■□□□□ 0.1
USF1P22415 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC15.66■□□□□ 0.1
USF1P22415 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC15.66■□□□□ 0.1
USF1P22415 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
USF1P22415 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC15.66■□□□□ 0.1
USF1P22415 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC15.66■□□□□ 0.1
USF1P22415 AC098818.2-201ENST00000564925 2320 ntBASIC15.66■□□□□ 0.1
USF1P22415 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF1P22415 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC15.65■□□□□ 0.1
USF1P22415 GAS2L1P1-201ENST00000420145 1480 ntBASIC15.65■□□□□ 0.1
USF1P22415 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
USF1P22415 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC15.65■□□□□ 0.1
USF1P22415 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
USF1P22415 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
USF1P22415 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
USF1P22415 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms