Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC14.92□□□□□ -0.02
HMGB3O15347 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
HMGB3O15347 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC14.92□□□□□ -0.02
HMGB3O15347 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.92□□□□□ -0.02
HMGB3O15347 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC14.92□□□□□ -0.02
HMGB3O15347 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC14.92□□□□□ -0.02
HMGB3O15347 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC14.92□□□□□ -0.02
HMGB3O15347 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC14.92□□□□□ -0.02
HMGB3O15347 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 GATB-213ENST00000515812 1893 ntTSL 5 BASIC14.91□□□□□ -0.02
HMGB3O15347 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC14.91□□□□□ -0.02
HMGB3O15347 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 TFP1-202ENST00000475455 1573 ntBASIC14.91□□□□□ -0.02
HMGB3O15347 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
HMGB3O15347 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
HMGB3O15347 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 JTB-203ENST00000368589 1216 ntTSL 2 BASIC14.91□□□□□ -0.02
HMGB3O15347 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 CALM3-202ENST00000391918 702 ntTSL 2 BASIC14.91□□□□□ -0.02
HMGB3O15347 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 AC100791.3-201ENST00000617619 330 ntBASIC14.91□□□□□ -0.02
HMGB3O15347 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
HMGB3O15347 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HMGB3O15347 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
HMGB3O15347 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC14.91□□□□□ -0.02
HMGB3O15347 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGB3O15347 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGB3O15347 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGB3O15347 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC14.9□□□□□ -0.02
HMGB3O15347 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC14.9□□□□□ -0.02
HMGB3O15347 C2orf69P4-201ENST00000565394 541 ntBASIC14.9□□□□□ -0.02
HMGB3O15347 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 AC013268.1-206ENST00000638368 961 ntBASIC14.9□□□□□ -0.02
HMGB3O15347 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC14.9□□□□□ -0.02
HMGB3O15347 AC112229.1-201ENST00000639295 961 ntBASIC14.9□□□□□ -0.02
HMGB3O15347 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGB3O15347 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 AC134043.2-201ENST00000624206 2238 ntBASIC14.9□□□□□ -0.02
HMGB3O15347 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 MKRN4P-201ENST00000444706 1521 ntBASIC14.9□□□□□ -0.02
HMGB3O15347 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HMGB3O15347 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 AC009053.2-201ENST00000563701 2365 ntBASIC14.9□□□□□ -0.02
HMGB3O15347 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
HMGB3O15347 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB3O15347 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC14.89□□□□□ -0.03
HMGB3O15347 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC14.89□□□□□ -0.03
HMGB3O15347 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB3O15347 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms