Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 ATP5G2P1-201ENST00000433580 426 ntBASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 DUSP5P1-201ENST00000441325 1139 ntBASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TMX2-CTNND1H3BSU7 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 AL390961.4-201ENST00000623958 2535 ntBASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 AC104417.2-201ENST00000562989 1793 ntBASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 CLEC4GP1-201ENST00000596555 870 ntBASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TMX2-CTNND1H3BSU7 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TMX2-CTNND1H3BSU7 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TMX2-CTNND1H3BSU7 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
TMX2-CTNND1H3BSU7 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TMX2-CTNND1H3BSU7 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
TMX2-CTNND1H3BSU7 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 RASA4DP-201ENST00000460726 1199 ntBASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 ZNF815P-204ENST00000434898 1737 ntBASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.14■□□□□ 0.49
TMX2-CTNND1H3BSU7 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms