Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 AC009065.1-201ENST00000564055 1225 ntBASIC19.37■□□□□ 0.69
USP3Q9Y6I4 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 AL136038.4-201ENST00000603606 1261 ntBASIC19.37■□□□□ 0.69
USP3Q9Y6I4 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP3Q9Y6I4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 AC005332.1-201ENST00000577698 1310 ntBASIC19.35■□□□□ 0.69
USP3Q9Y6I4 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.35■□□□□ 0.69
USP3Q9Y6I4 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 MIR149-201ENST00000384879 89 ntBASIC19.34■□□□□ 0.69
USP3Q9Y6I4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP3Q9Y6I4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.69
USP3Q9Y6I4 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP3Q9Y6I4 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.33■□□□□ 0.69
USP3Q9Y6I4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP3Q9Y6I4 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP3Q9Y6I4 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP3Q9Y6I4 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.33■□□□□ 0.69
USP3Q9Y6I4 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USP3Q9Y6I4 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
USP3Q9Y6I4 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.33■□□□□ 0.69
USP3Q9Y6I4 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms