Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC28■■■□□ 2.07
COL17A1Q9UMD9 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC28■■■□□ 2.07
COL17A1Q9UMD9 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC28■■■□□ 2.07
COL17A1Q9UMD9 AL356309.3-201ENST00000624132 1934 ntBASIC28■■■□□ 2.07
COL17A1Q9UMD9 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC28■■■□□ 2.07
COL17A1Q9UMD9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
COL17A1Q9UMD9 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
COL17A1Q9UMD9 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 PAWRP1-201ENST00000451083 565 ntBASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC27.99■■■□□ 2.07
COL17A1Q9UMD9 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 EFS-203ENST00000429593 2610 ntTSL 2 BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 PTMS-202ENST00000389462 773 ntTSL 2 BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 AL138831.2-201ENST00000606564 490 ntBASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL17A1Q9UMD9 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 KLK8-202ENST00000320838 456 ntTSL 5 BASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 CCDC74BP1-201ENST00000508880 1123 ntBASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 AC011467.2-201ENST00000598425 242 ntBASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 AC020907.5-201ENST00000624372 1936 ntBASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC27.97■■■□□ 2.07
COL17A1Q9UMD9 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
COL17A1Q9UMD9 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
COL17A1Q9UMD9 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC27.96■■■□□ 2.07
COL17A1Q9UMD9 COX5A-204ENST00000567270 579 ntTSL 3 BASIC27.96■■■□□ 2.07
COL17A1Q9UMD9 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC27.96■■■□□ 2.07
COL17A1Q9UMD9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
COL17A1Q9UMD9 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC27.96■■■□□ 2.07
COL17A1Q9UMD9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
COL17A1Q9UMD9 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC27.96■■■□□ 2.07
COL17A1Q9UMD9 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
COL17A1Q9UMD9 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
COL17A1Q9UMD9 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
COL17A1Q9UMD9 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC27.95■■■□□ 2.07
COL17A1Q9UMD9 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC27.95■■■□□ 2.07
COL17A1Q9UMD9 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
COL17A1Q9UMD9 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC27.95■■■□□ 2.07
COL17A1Q9UMD9 AL139288.1-201ENST00000623748 933 ntBASIC27.95■■■□□ 2.07
COL17A1Q9UMD9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC27.95■■■□□ 2.07
COL17A1Q9UMD9 CYP51A1P1-201ENST00000492267 1507 ntBASIC27.95■■■□□ 2.07
COL17A1Q9UMD9 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
COL17A1Q9UMD9 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC27.95■■■□□ 2.07
COL17A1Q9UMD9 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
COL17A1Q9UMD9 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC27.95■■■□□ 2.06
COL17A1Q9UMD9 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
COL17A1Q9UMD9 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC27.95■■■□□ 2.06
COL17A1Q9UMD9 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
COL17A1Q9UMD9 INIP-202ENST00000374236 874 ntTSL 2 BASIC27.95■■■□□ 2.06
COL17A1Q9UMD9 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC27.95■■■□□ 2.06
COL17A1Q9UMD9 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
COL17A1Q9UMD9 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC27.95■■■□□ 2.06
COL17A1Q9UMD9 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC27.95■■■□□ 2.06
COL17A1Q9UMD9 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC27.95■■■□□ 2.06
COL17A1Q9UMD9 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC27.95■■■□□ 2.06
COL17A1Q9UMD9 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
COL17A1Q9UMD9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 GABARAPL3-202ENST00000624044 1851 ntBASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms