Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AC099336.1-202ENST00000602961 463 ntBASIC21.85■■□□□ 1.09
DDX4Q9NQI0 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.85■■□□□ 1.09
DDX4Q9NQI0 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
DDX4Q9NQI0 KRT8P10-201ENST00000450021 1447 ntBASIC21.85■■□□□ 1.09
DDX4Q9NQI0 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC21.85■■□□□ 1.09
DDX4Q9NQI0 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.85■■□□□ 1.09
DDX4Q9NQI0 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
DDX4Q9NQI0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 AL499627.1-201ENST00000569373 2188 ntBASIC21.84■■□□□ 1.09
DDX4Q9NQI0 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 GUSBP12-201ENST00000513727 720 ntBASIC21.84■■□□□ 1.09
DDX4Q9NQI0 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX4Q9NQI0 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 Z69720.1-201ENST00000601483 472 ntBASIC21.83■■□□□ 1.09
DDX4Q9NQI0 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX4Q9NQI0 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
DDX4Q9NQI0 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.83■■□□□ 1.08
DDX4Q9NQI0 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
DDX4Q9NQI0 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.83■■□□□ 1.08
DDX4Q9NQI0 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 NSUN5P1-202ENST00000421140 1535 ntBASIC21.82■■□□□ 1.08
DDX4Q9NQI0 NSUN5P2-203ENST00000457352 1529 ntBASIC21.82■■□□□ 1.08
DDX4Q9NQI0 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 MIR149-201ENST00000384879 89 ntBASIC21.82■■□□□ 1.08
DDX4Q9NQI0 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX4Q9NQI0 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 SDHAP2-201ENST00000455183 2001 ntBASIC21.81■■□□□ 1.08
DDX4Q9NQI0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms