Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 AC004264.1-201ENST00000608354 794 ntBASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 KRT8P11-201ENST00000409686 1436 ntBASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28BQ9BUN5 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 PCDHA12-202ENST00000613593 2588 ntBASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 FLJ13224-201ENST00000313737 1514 ntBASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 TSPY6P-201ENST00000448518 926 ntBASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 AC006970.2-201ENST00000450065 779 ntBASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 AC083880.1-201ENST00000608266 535 ntBASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC28BQ9BUN5 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 PRSS44-201ENST00000515154 1146 ntBASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms