Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.01■□□□□ 0.31
TIMP4Q99727 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 FEM1AP3-201ENST00000403722 1741 ntBASIC17.01■□□□□ 0.31
TIMP4Q99727 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.01■□□□□ 0.31
TIMP4Q99727 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.01■□□□□ 0.31
TIMP4Q99727 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.01■□□□□ 0.31
TIMP4Q99727 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
TIMP4Q99727 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
TIMP4Q99727 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17■□□□□ 0.31
TIMP4Q99727 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17■□□□□ 0.31
TIMP4Q99727 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17■□□□□ 0.31
TIMP4Q99727 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 PCDHB18P-201ENST00000524813 2368 ntBASIC17■□□□□ 0.31
TIMP4Q99727 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17■□□□□ 0.31
TIMP4Q99727 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17■□□□□ 0.31
TIMP4Q99727 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17■□□□□ 0.31
TIMP4Q99727 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17■□□□□ 0.31
TIMP4Q99727 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17■□□□□ 0.31
TIMP4Q99727 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17■□□□□ 0.31
TIMP4Q99727 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17■□□□□ 0.31
TIMP4Q99727 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17■□□□□ 0.31
TIMP4Q99727 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17■□□□□ 0.31
TIMP4Q99727 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
TIMP4Q99727 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17■□□□□ 0.31
TIMP4Q99727 AL023973.1-201ENST00000624619 620 ntBASIC17■□□□□ 0.31
TIMP4Q99727 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17■□□□□ 0.31
TIMP4Q99727 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
TIMP4Q99727 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17■□□□□ 0.31
TIMP4Q99727 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
TIMP4Q99727 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.99■□□□□ 0.31
TIMP4Q99727 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.99■□□□□ 0.31
TIMP4Q99727 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.99■□□□□ 0.31
TIMP4Q99727 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
TIMP4Q99727 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.99■□□□□ 0.31
TIMP4Q99727 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.99■□□□□ 0.31
TIMP4Q99727 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.99■□□□□ 0.31
TIMP4Q99727 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC16.99■□□□□ 0.31
TIMP4Q99727 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 AP000523.1-201ENST00000398242 1049 ntBASIC16.99■□□□□ 0.31
TIMP4Q99727 AC009947.2-201ENST00000444014 672 ntBASIC16.99■□□□□ 0.31
TIMP4Q99727 AC092647.4-201ENST00000457211 535 ntBASIC16.99■□□□□ 0.31
TIMP4Q99727 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 AL441883.1-201ENST00000566170 1045 ntBASIC16.99■□□□□ 0.31
TIMP4Q99727 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.99■□□□□ 0.31
TIMP4Q99727 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
TIMP4Q99727 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.99■□□□□ 0.31
TIMP4Q99727 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.99■□□□□ 0.31
TIMP4Q99727 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TIMP4Q99727 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
TIMP4Q99727 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TIMP4Q99727 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
TIMP4Q99727 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.98■□□□□ 0.31
TIMP4Q99727 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TIMP4Q99727 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
TIMP4Q99727 KRT8P3-201ENST00000519669 1449 ntBASIC16.98■□□□□ 0.31
TIMP4Q99727 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TIMP4Q99727 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TIMP4Q99727 AC120498.9-201ENST00000339021 3867 ntBASIC16.98■□□□□ 0.31
TIMP4Q99727 AC068880.1-201ENST00000507289 2297 ntBASIC16.98■□□□□ 0.31
TIMP4Q99727 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TIMP4Q99727 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
TIMP4Q99727 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.98■□□□□ 0.31
TIMP4Q99727 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
TIMP4Q99727 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.98■□□□□ 0.31
TIMP4Q99727 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.98■□□□□ 0.31
TIMP4Q99727 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms