Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.32■□□□□ 0.68
CDX2Q99626 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDX2Q99626 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.32■□□□□ 0.68
CDX2Q99626 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDX2Q99626 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CDX2Q99626 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CDX2Q99626 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CDX2Q99626 HLA-V-201ENST00000429037 534 ntBASIC19.32■□□□□ 0.68
CDX2Q99626 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDX2Q99626 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.32■□□□□ 0.68
CDX2Q99626 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CDX2Q99626 AC005498.2-205ENST00000593218 784 ntBASIC19.32■□□□□ 0.68
CDX2Q99626 AC012645.4-201ENST00000610691 1061 ntBASIC19.32■□□□□ 0.68
CDX2Q99626 PGM5P2-202ENST00000637225 1043 ntBASIC19.32■□□□□ 0.68
CDX2Q99626 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CDX2Q99626 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.32■□□□□ 0.68
CDX2Q99626 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CDX2Q99626 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDX2Q99626 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDX2Q99626 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDX2Q99626 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.32■□□□□ 0.68
CDX2Q99626 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CDX2Q99626 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
CDX2Q99626 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.31■□□□□ 0.68
CDX2Q99626 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.31■□□□□ 0.68
CDX2Q99626 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.31■□□□□ 0.68
CDX2Q99626 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.31■□□□□ 0.68
CDX2Q99626 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.31■□□□□ 0.68
CDX2Q99626 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.31■□□□□ 0.68
CDX2Q99626 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
CDX2Q99626 AP000867.4-201ENST00000641616 219 ntBASIC19.31■□□□□ 0.68
CDX2Q99626 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CDX2Q99626 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CDX2Q99626 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CDX2Q99626 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.31■□□□□ 0.68
CDX2Q99626 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDX2Q99626 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.3■□□□□ 0.68
CDX2Q99626 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
CDX2Q99626 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
CDX2Q99626 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CDX2Q99626 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CDX2Q99626 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CDX2Q99626 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.3■□□□□ 0.68
CDX2Q99626 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.3■□□□□ 0.68
CDX2Q99626 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.3■□□□□ 0.68
CDX2Q99626 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.3■□□□□ 0.68
CDX2Q99626 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.3■□□□□ 0.68
CDX2Q99626 DUX4L17-201ENST00000557360 1267 ntBASIC19.3■□□□□ 0.68
CDX2Q99626 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.3■□□□□ 0.68
CDX2Q99626 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.3■□□□□ 0.68
CDX2Q99626 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.3■□□□□ 0.68
CDX2Q99626 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX2Q99626 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.29■□□□□ 0.68
CDX2Q99626 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDX2Q99626 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.29■□□□□ 0.68
CDX2Q99626 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
CDX2Q99626 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDX2Q99626 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.29■□□□□ 0.68
CDX2Q99626 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.29■□□□□ 0.68
CDX2Q99626 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDX2Q99626 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CDX2Q99626 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.29■□□□□ 0.68
CDX2Q99626 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDX2Q99626 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDX2Q99626 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDX2Q99626 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CDX2Q99626 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CDX2Q99626 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.29■□□□□ 0.68
CDX2Q99626 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDX2Q99626 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
CDX2Q99626 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CDX2Q99626 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC19.29■□□□□ 0.68
CDX2Q99626 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.29■□□□□ 0.68
CDX2Q99626 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CDX2Q99626 AL031432.2-201ENST00000566714 459 ntBASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms