Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 HLA-J-201ENST00000462773 1622 ntBASIC20.04■□□□□ 0.8
LRCH3Q96II8 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRCH3Q96II8 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRCH3Q96II8 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRCH3Q96II8 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRCH3Q96II8 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRCH3Q96II8 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRCH3Q96II8 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRCH3Q96II8 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRCH3Q96II8 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
LRCH3Q96II8 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRCH3Q96II8 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRCH3Q96II8 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.03■□□□□ 0.8
LRCH3Q96II8 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.03■□□□□ 0.8
LRCH3Q96II8 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.03■□□□□ 0.8
LRCH3Q96II8 AC009533.2-201ENST00000543664 586 ntBASIC20.03■□□□□ 0.8
LRCH3Q96II8 AC021087.4-201ENST00000563761 564 ntBASIC20.03■□□□□ 0.8
LRCH3Q96II8 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.03■□□□□ 0.8
LRCH3Q96II8 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
LRCH3Q96II8 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRCH3Q96II8 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.03■□□□□ 0.8
LRCH3Q96II8 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.03■□□□□ 0.8
LRCH3Q96II8 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LRCH3Q96II8 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRCH3Q96II8 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.03■□□□□ 0.8
LRCH3Q96II8 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRCH3Q96II8 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRCH3Q96II8 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.02■□□□□ 0.8
LRCH3Q96II8 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LRCH3Q96II8 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRCH3Q96II8 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRCH3Q96II8 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LRCH3Q96II8 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC20.02■□□□□ 0.8
LRCH3Q96II8 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC20.02■□□□□ 0.8
LRCH3Q96II8 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.02■□□□□ 0.8
LRCH3Q96II8 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC20.02■□□□□ 0.8
LRCH3Q96II8 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.02■□□□□ 0.8
LRCH3Q96II8 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC20.02■□□□□ 0.8
LRCH3Q96II8 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LRCH3Q96II8 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
LRCH3Q96II8 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRCH3Q96II8 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.02■□□□□ 0.8
LRCH3Q96II8 GABARAPL3-202ENST00000624044 1851 ntBASIC20.02■□□□□ 0.8
LRCH3Q96II8 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRCH3Q96II8 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.02■□□□□ 0.8
LRCH3Q96II8 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRCH3Q96II8 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRCH3Q96II8 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LRCH3Q96II8 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LRCH3Q96II8 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRCH3Q96II8 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRCH3Q96II8 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRCH3Q96II8 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRCH3Q96II8 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRCH3Q96II8 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRCH3Q96II8 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LRCH3Q96II8 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRCH3Q96II8 BCRP1-201ENST00000444246 691 ntBASIC20.01■□□□□ 0.79
LRCH3Q96II8 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.01■□□□□ 0.79
LRCH3Q96II8 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.01■□□□□ 0.79
LRCH3Q96II8 AP002472.1-201ENST00000577490 586 ntBASIC20.01■□□□□ 0.79
LRCH3Q96II8 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LRCH3Q96II8 AC010240.3-201ENST00000607688 395 ntBASIC20.01■□□□□ 0.79
LRCH3Q96II8 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.01■□□□□ 0.79
LRCH3Q96II8 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRCH3Q96II8 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRCH3Q96II8 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRCH3Q96II8 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LRCH3Q96II8 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRCH3Q96II8 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LRCH3Q96II8 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LRCH3Q96II8 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.01■□□□□ 0.79
LRCH3Q96II8 AFG3L1P-217ENST00000557444 2447 ntBASIC20.01■□□□□ 0.79
LRCH3Q96II8 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRCH3Q96II8 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRCH3Q96II8 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRCH3Q96II8 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
LRCH3Q96II8 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
LRCH3Q96II8 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
LRCH3Q96II8 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRCH3Q96II8 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20■□□□□ 0.79
LRCH3Q96II8 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
LRCH3Q96II8 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20■□□□□ 0.79
LRCH3Q96II8 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20■□□□□ 0.79
LRCH3Q96II8 RBM17P3-201ENST00000417687 1192 ntBASIC20■□□□□ 0.79
LRCH3Q96II8 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC20■□□□□ 0.79
LRCH3Q96II8 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20■□□□□ 0.79
LRCH3Q96II8 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC20■□□□□ 0.79
LRCH3Q96II8 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms