Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 AL023284.2-201ENST00000405850 579 ntBASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 KRT8P3-201ENST00000519669 1449 ntBASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 AC036111.1-201ENST00000533973 1582 ntBASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 AL032819.2-201ENST00000624543 2162 ntBASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 UPK3BP1-201ENST00000428678 509 ntBASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 AL356309.3-201ENST00000624132 1934 ntBASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLIP3Q96DZ5 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 AC112907.2-201ENST00000448639 330 ntBASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 AL121956.5-201ENST00000625261 221 ntBASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLIP3Q96DZ5 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 TEX21P-204ENST00000641479 1693 ntBASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLIP3Q96DZ5 KRT18P38-201ENST00000449496 1282 ntBASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms