Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 AC135776.1-201ENST00000319817 2481 ntBASIC17.89■□□□□ 0.45
HMGCS1Q01581 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGCS1Q01581 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGCS1Q01581 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 GPAT2P1-201ENST00000444924 1672 ntBASIC17.88■□□□□ 0.45
HMGCS1Q01581 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 AL023284.2-201ENST00000405850 579 ntBASIC17.88■□□□□ 0.45
HMGCS1Q01581 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 AC066615.1-201ENST00000640911 628 ntBASIC17.88■□□□□ 0.45
HMGCS1Q01581 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGCS1Q01581 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGCS1Q01581 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGCS1Q01581 AC097488.1-201ENST00000507834 756 ntBASIC17.87■□□□□ 0.45
HMGCS1Q01581 AC008550.1-201ENST00000511500 884 ntBASIC17.87■□□□□ 0.45
HMGCS1Q01581 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 AC233702.5-201ENST00000584107 538 ntBASIC17.87■□□□□ 0.45
HMGCS1Q01581 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGCS1Q01581 DGCR10-201ENST00000609839 495 ntBASIC17.87■□□□□ 0.45
HMGCS1Q01581 REXO1L10P-201ENST00000615707 1290 ntBASIC17.87■□□□□ 0.45
HMGCS1Q01581 REXO1L12P-201ENST00000622156 912 ntBASIC17.87■□□□□ 0.45
HMGCS1Q01581 AL049637.2-201ENST00000641778 930 ntBASIC17.87■□□□□ 0.45
HMGCS1Q01581 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms