Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
RPS28P62857 AC009090.5-201ENST00000624886 2285 ntBASIC10.74□□□□□ -0.69
RPS28P62857 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC10.74□□□□□ -0.69
RPS28P62857 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC10.74□□□□□ -0.69
RPS28P62857 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
RPS28P62857 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 AC118758.2-201ENST00000614242 2813 ntBASIC10.74□□□□□ -0.69
RPS28P62857 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC10.74□□□□□ -0.69
RPS28P62857 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
RPS28P62857 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 PAUPAR-201ENST00000630360 2965 ntBASIC10.74□□□□□ -0.69
RPS28P62857 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
RPS28P62857 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC10.74□□□□□ -0.69
RPS28P62857 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC10.74□□□□□ -0.69
RPS28P62857 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC10.74□□□□□ -0.69
RPS28P62857 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
RPS28P62857 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC10.74□□□□□ -0.69
RPS28P62857 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC10.74□□□□□ -0.69
RPS28P62857 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC10.74□□□□□ -0.69
RPS28P62857 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
RPS28P62857 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC10.74□□□□□ -0.69
RPS28P62857 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC10.74□□□□□ -0.69
RPS28P62857 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
RPS28P62857 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
RPS28P62857 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC10.73□□□□□ -0.69
RPS28P62857 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC10.73□□□□□ -0.69
RPS28P62857 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC10.73□□□□□ -0.69
RPS28P62857 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC10.73□□□□□ -0.69
RPS28P62857 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC10.73□□□□□ -0.69
RPS28P62857 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC10.73□□□□□ -0.69
RPS28P62857 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC10.73□□□□□ -0.69
RPS28P62857 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC10.73□□□□□ -0.69
RPS28P62857 AC079781.5-202ENST00000641784 3743 ntBASIC10.73□□□□□ -0.69
RPS28P62857 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC10.73□□□□□ -0.69
RPS28P62857 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 DKFZP434A062-201ENST00000573103 5021 ntBASIC10.73□□□□□ -0.69
RPS28P62857 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 PEX7-203ENST00000541292 945 ntTSL 5 BASIC10.73□□□□□ -0.69
RPS28P62857 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC10.73□□□□□ -0.69
RPS28P62857 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC10.73□□□□□ -0.69
RPS28P62857 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
RPS28P62857 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC10.73□□□□□ -0.69
RPS28P62857 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 AC006449.5-201ENST00000610658 2098 ntBASIC10.73□□□□□ -0.69
RPS28P62857 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC10.73□□□□□ -0.69
RPS28P62857 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
RPS28P62857 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC10.73□□□□□ -0.69
RPS28P62857 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 WT1-209ENST00000530998 2421 ntTSL 2 BASIC10.73□□□□□ -0.69
RPS28P62857 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
RPS28P62857 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
RPS28P62857 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
RPS28P62857 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
RPS28P62857 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
RPS28P62857 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC10.72□□□□□ -0.69
RPS28P62857 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC10.72□□□□□ -0.69
RPS28P62857 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC10.72□□□□□ -0.69
RPS28P62857 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
RPS28P62857 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC10.72□□□□□ -0.69
RPS28P62857 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
RPS28P62857 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
RPS28P62857 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC10.72□□□□□ -0.69
RPS28P62857 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
RPS28P62857 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
RPS28P62857 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
RPS28P62857 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
RPS28P62857 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms