Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.31■□□□□ 0.68
CDH6P55285 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH6P55285 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.31■□□□□ 0.68
CDH6P55285 TSPY17P-201ENST00000450329 467 ntBASIC19.31■□□□□ 0.68
CDH6P55285 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.31■□□□□ 0.68
CDH6P55285 AL353719.1-201ENST00000566847 864 ntBASIC19.31■□□□□ 0.68
CDH6P55285 MIR3180-5-201ENST00000583743 153 ntBASIC19.31■□□□□ 0.68
CDH6P55285 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDH6P55285 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDH6P55285 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH6P55285 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
CDH6P55285 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.31■□□□□ 0.68
CDH6P55285 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.3■□□□□ 0.68
CDH6P55285 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.3■□□□□ 0.68
CDH6P55285 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CDH6P55285 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CDH6P55285 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.3■□□□□ 0.68
CDH6P55285 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.3■□□□□ 0.68
CDH6P55285 CCR12P-201ENST00000446203 998 ntBASIC19.3■□□□□ 0.68
CDH6P55285 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.3■□□□□ 0.68
CDH6P55285 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.3■□□□□ 0.68
CDH6P55285 KRT18P41-201ENST00000518924 1277 ntBASIC19.3■□□□□ 0.68
CDH6P55285 C2orf69P3-201ENST00000565542 1120 ntBASIC19.3■□□□□ 0.68
CDH6P55285 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CDH6P55285 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 MYLKP1-201ENST00000509077 1580 ntBASIC19.3■□□□□ 0.68
CDH6P55285 AC036111.1-201ENST00000533973 1582 ntBASIC19.3■□□□□ 0.68
CDH6P55285 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.3■□□□□ 0.68
CDH6P55285 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.3■□□□□ 0.68
CDH6P55285 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CDH6P55285 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH6P55285 AC034236.2-201ENST00000606662 1610 ntBASIC19.29■□□□□ 0.68
CDH6P55285 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH6P55285 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH6P55285 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH6P55285 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CDH6P55285 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.29■□□□□ 0.68
CDH6P55285 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH6P55285 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH6P55285 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH6P55285 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
CDH6P55285 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.29■□□□□ 0.68
CDH6P55285 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.29■□□□□ 0.68
CDH6P55285 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.29■□□□□ 0.68
CDH6P55285 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.29■□□□□ 0.68
CDH6P55285 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.29■□□□□ 0.68
CDH6P55285 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.29■□□□□ 0.68
CDH6P55285 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH6P55285 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.29■□□□□ 0.68
CDH6P55285 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH6P55285 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH6P55285 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH6P55285 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH6P55285 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH6P55285 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDH6P55285 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH6P55285 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH6P55285 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CDH6P55285 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH6P55285 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH6P55285 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CDH6P55285 AC092338.2-201ENST00000568827 1415 ntBASIC19.28■□□□□ 0.68
CDH6P55285 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CDH6P55285 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH6P55285 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDH6P55285 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH6P55285 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.28■□□□□ 0.68
CDH6P55285 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.28■□□□□ 0.68
CDH6P55285 AC116562.4-202ENST00000641738 218 ntBASIC19.28■□□□□ 0.68
CDH6P55285 AL390961.4-201ENST00000623958 2535 ntBASIC19.28■□□□□ 0.68
CDH6P55285 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CDH6P55285 BCL2-203ENST00000589955 5011 ntBASIC19.28■□□□□ 0.68
CDH6P55285 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH6P55285 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.28■□□□□ 0.68
CDH6P55285 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH6P55285 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
CDH6P55285 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDH6P55285 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CDH6P55285 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH6P55285 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CDH6P55285 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.27■□□□□ 0.68
CDH6P55285 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CDH6P55285 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH6P55285 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH6P55285 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH6P55285 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CDH6P55285 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.27■□□□□ 0.68
CDH6P55285 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms