Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.47■□□□□ 0.71
LIG3P49916 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.47■□□□□ 0.71
LIG3P49916 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
LIG3P49916 HTR7P1-202ENST00000624664 4411 ntBASIC19.47■□□□□ 0.71
LIG3P49916 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG3P49916 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
LIG3P49916 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
LIG3P49916 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG3P49916 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG3P49916 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
LIG3P49916 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.46■□□□□ 0.71
LIG3P49916 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.46■□□□□ 0.71
LIG3P49916 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
LIG3P49916 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.46■□□□□ 0.71
LIG3P49916 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
LIG3P49916 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.46■□□□□ 0.71
LIG3P49916 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.46■□□□□ 0.71
LIG3P49916 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.46■□□□□ 0.71
LIG3P49916 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
LIG3P49916 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.46■□□□□ 0.71
LIG3P49916 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.46■□□□□ 0.71
LIG3P49916 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.46■□□□□ 0.71
LIG3P49916 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 HLA-A-209ENST00000638375 975 ntBASIC19.46■□□□□ 0.71
LIG3P49916 AL031985.4-201ENST00000642138 673 ntBASIC19.46■□□□□ 0.71
LIG3P49916 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG3P49916 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
LIG3P49916 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LIG3P49916 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.45■□□□□ 0.7
LIG3P49916 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
LIG3P49916 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.45■□□□□ 0.7
LIG3P49916 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
LIG3P49916 BX088651.1-201ENST00000540551 451 ntBASIC19.45■□□□□ 0.7
LIG3P49916 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.45■□□□□ 0.7
LIG3P49916 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.45■□□□□ 0.7
LIG3P49916 REXO1L10P-201ENST00000615707 1290 ntBASIC19.45■□□□□ 0.7
LIG3P49916 REXO1L12P-201ENST00000622156 912 ntBASIC19.45■□□□□ 0.7
LIG3P49916 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.45■□□□□ 0.7
LIG3P49916 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.45■□□□□ 0.7
LIG3P49916 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
LIG3P49916 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG3P49916 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIG3P49916 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG3P49916 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG3P49916 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LIG3P49916 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.44■□□□□ 0.7
LIG3P49916 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG3P49916 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIG3P49916 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG3P49916 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.44■□□□□ 0.7
LIG3P49916 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.44■□□□□ 0.7
LIG3P49916 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.44■□□□□ 0.7
LIG3P49916 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIG3P49916 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.44■□□□□ 0.7
LIG3P49916 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.44■□□□□ 0.7
LIG3P49916 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.44■□□□□ 0.7
LIG3P49916 AC131212.4-201ENST00000623606 975 ntBASIC19.44■□□□□ 0.7
LIG3P49916 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.44■□□□□ 0.7
LIG3P49916 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
LIG3P49916 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.44■□□□□ 0.7
LIG3P49916 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
LIG3P49916 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG3P49916 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
LIG3P49916 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG3P49916 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIG3P49916 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
LIG3P49916 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIG3P49916 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LIG3P49916 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.44■□□□□ 0.7
LIG3P49916 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG3P49916 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms