Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
CDX1P47902 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC15.14■□□□□ 0.01
CDX1P47902 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC15.14■□□□□ 0.01
CDX1P47902 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC15.14■□□□□ 0.01
CDX1P47902 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC15.14■□□□□ 0.01
CDX1P47902 REXO1L12P-201ENST00000622156 912 ntBASIC15.14■□□□□ 0.01
CDX1P47902 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC15.14■□□□□ 0.01
CDX1P47902 AL031985.4-201ENST00000642138 673 ntBASIC15.14■□□□□ 0.01
CDX1P47902 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC15.14■□□□□ 0.01
CDX1P47902 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CDX1P47902 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC15.14■□□□□ 0.01
CDX1P47902 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDX1P47902 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC15.13■□□□□ 0.01
CDX1P47902 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDX1P47902 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDX1P47902 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDX1P47902 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDX1P47902 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDX1P47902 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC15.13■□□□□ 0.01
CDX1P47902 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC15.13■□□□□ 0.01
CDX1P47902 KRT8P8-201ENST00000434750 1448 ntBASIC15.13■□□□□ 0.01
CDX1P47902 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC15.13■□□□□ 0.01
CDX1P47902 BX088651.1-201ENST00000540551 451 ntBASIC15.13■□□□□ 0.01
CDX1P47902 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CDX1P47902 AL691432.2-201ENST00000607222 2038 ntBASIC15.13■□□□□ 0.01
CDX1P47902 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.13■□□□□ 0.01
CDX1P47902 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDX1P47902 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDX1P47902 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CDX1P47902 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.13■□□□□ 0.01
CDX1P47902 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDX1P47902 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDX1P47902 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC15.13■□□□□ 0.01
CDX1P47902 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
CDX1P47902 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
CDX1P47902 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.12■□□□□ 0.01
CDX1P47902 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 PPP1R14BP5-201ENST00000440334 435 ntBASIC15.12■□□□□ 0.01
CDX1P47902 AC116562.2-201ENST00000507042 360 ntBASIC15.12■□□□□ 0.01
CDX1P47902 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC15.12■□□□□ 0.01
CDX1P47902 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
CDX1P47902 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC15.12■□□□□ 0.01
CDX1P47902 AL355075.4-201ENST00000554988 638 ntBASIC15.12■□□□□ 0.01
CDX1P47902 AC026271.3-201ENST00000571884 352 ntBASIC15.12■□□□□ 0.01
CDX1P47902 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC15.12■□□□□ 0.01
CDX1P47902 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC15.12■□□□□ 0.01
CDX1P47902 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
CDX1P47902 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CDX1P47902 AC131212.4-201ENST00000623606 975 ntBASIC15.12■□□□□ 0.01
CDX1P47902 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CDX1P47902 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CDX1P47902 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.12■□□□□ 0.01
CDX1P47902 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDX1P47902 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CDX1P47902 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 EFTUD1P1-204ENST00000560401 1798 ntBASIC15.11■□□□□ 0.01
CDX1P47902 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC15.11■□□□□ 0.01
CDX1P47902 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CDX1P47902 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.11■□□□□ 0.01
CDX1P47902 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC15.11■□□□□ 0.01
CDX1P47902 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.11■□□□□ 0.01
CDX1P47902 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC15.11■□□□□ 0.01
CDX1P47902 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC15.11■□□□□ 0.01
CDX1P47902 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms