Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
HNF4AP41235 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.99■□□□□ 0.47
HNF4AP41235 AC008556.1-201ENST00000610908 2040 ntBASIC17.99■□□□□ 0.47
HNF4AP41235 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.99■□□□□ 0.47
HNF4AP41235 C2orf69P3-201ENST00000565542 1120 ntBASIC17.99■□□□□ 0.47
HNF4AP41235 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.99■□□□□ 0.47
HNF4AP41235 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.99■□□□□ 0.47
HNF4AP41235 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.99■□□□□ 0.47
HNF4AP41235 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HNF4AP41235 AC126763.1-201ENST00000552015 2118 ntBASIC17.99■□□□□ 0.47
HNF4AP41235 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.99■□□□□ 0.47
HNF4AP41235 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
HNF4AP41235 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.99■□□□□ 0.47
HNF4AP41235 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
HNF4AP41235 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
HNF4AP41235 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HNF4AP41235 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.98■□□□□ 0.47
HNF4AP41235 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.98■□□□□ 0.47
HNF4AP41235 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
HNF4AP41235 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.98■□□□□ 0.47
HNF4AP41235 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HNF4AP41235 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HNF4AP41235 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.98■□□□□ 0.47
HNF4AP41235 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HNF4AP41235 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.98■□□□□ 0.47
HNF4AP41235 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.98■□□□□ 0.47
HNF4AP41235 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.98■□□□□ 0.47
HNF4AP41235 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.98■□□□□ 0.47
HNF4AP41235 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.98■□□□□ 0.47
HNF4AP41235 KRT18P41-201ENST00000518924 1277 ntBASIC17.98■□□□□ 0.47
HNF4AP41235 NAPSB-206ENST00000562112 1266 ntBASIC17.98■□□□□ 0.47
HNF4AP41235 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.98■□□□□ 0.47
HNF4AP41235 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.98■□□□□ 0.47
HNF4AP41235 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.98■□□□□ 0.47
HNF4AP41235 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
HNF4AP41235 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 GPAT2P1-201ENST00000444924 1672 ntBASIC17.98■□□□□ 0.47
HNF4AP41235 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.98■□□□□ 0.47
HNF4AP41235 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
HNF4AP41235 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.98■□□□□ 0.47
HNF4AP41235 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HNF4AP41235 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 AL499627.1-201ENST00000569373 2188 ntBASIC17.97■□□□□ 0.47
HNF4AP41235 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.97■□□□□ 0.47
HNF4AP41235 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HNF4AP41235 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HNF4AP41235 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.97■□□□□ 0.47
HNF4AP41235 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.97■□□□□ 0.47
HNF4AP41235 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 MIR564-202ENST00000385049 94 ntBASIC17.97■□□□□ 0.47
HNF4AP41235 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.97■□□□□ 0.47
HNF4AP41235 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 AC087499.1-201ENST00000418141 1075 ntBASIC17.97■□□□□ 0.47
HNF4AP41235 SLC25A1P2-201ENST00000430693 912 ntBASIC17.97■□□□□ 0.47
HNF4AP41235 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.97■□□□□ 0.47
HNF4AP41235 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.97■□□□□ 0.47
HNF4AP41235 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.97■□□□□ 0.47
HNF4AP41235 AC010947.1-201ENST00000623454 693 ntBASIC17.97■□□□□ 0.47
HNF4AP41235 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HNF4AP41235 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HNF4AP41235 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms