Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SOX3P41225 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.45■□□□□ 0.38
SOX3P41225 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.45■□□□□ 0.38
SOX3P41225 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.45■□□□□ 0.38
SOX3P41225 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SOX3P41225 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.45■□□□□ 0.38
SOX3P41225 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX3P41225 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX3P41225 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX3P41225 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX3P41225 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX3P41225 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SOX3P41225 WIZP1-201ENST00000531444 2299 ntBASIC17.45■□□□□ 0.38
SOX3P41225 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SOX3P41225 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX3P41225 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SOX3P41225 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.44■□□□□ 0.38
SOX3P41225 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX3P41225 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SOX3P41225 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SOX3P41225 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
SOX3P41225 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.44■□□□□ 0.38
SOX3P41225 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.44■□□□□ 0.38
SOX3P41225 AC010331.1-201ENST00000611423 582 ntBASIC17.44■□□□□ 0.38
SOX3P41225 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.44■□□□□ 0.38
SOX3P41225 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SOX3P41225 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
SOX3P41225 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX3P41225 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX3P41225 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
SOX3P41225 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.43■□□□□ 0.38
SOX3P41225 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
SOX3P41225 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.43■□□□□ 0.38
SOX3P41225 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
SOX3P41225 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
SOX3P41225 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 AC141586.3-201ENST00000562166 1838 ntBASIC17.43■□□□□ 0.38
SOX3P41225 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.43■□□□□ 0.38
SOX3P41225 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 AC090164.3-201ENST00000610780 2143 ntBASIC17.43■□□□□ 0.38
SOX3P41225 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.43■□□□□ 0.38
SOX3P41225 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.43■□□□□ 0.38
SOX3P41225 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
SOX3P41225 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.43■□□□□ 0.38
SOX3P41225 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.43■□□□□ 0.38
SOX3P41225 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.43■□□□□ 0.38
SOX3P41225 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
SOX3P41225 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
SOX3P41225 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.43■□□□□ 0.38
SOX3P41225 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.43■□□□□ 0.38
SOX3P41225 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX3P41225 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SOX3P41225 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.42■□□□□ 0.38
SOX3P41225 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.42■□□□□ 0.38
SOX3P41225 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
SOX3P41225 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.42■□□□□ 0.38
SOX3P41225 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.42■□□□□ 0.38
SOX3P41225 AC008622.2-201ENST00000617006 1229 ntBASIC17.42■□□□□ 0.38
SOX3P41225 AL138966.2-201ENST00000621997 464 ntBASIC17.42■□□□□ 0.38
SOX3P41225 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SOX3P41225 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms