Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.2■□□□□ 0.82
RFX1P22670 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.2■□□□□ 0.82
RFX1P22670 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
RFX1P22670 AC116562.4-202ENST00000641738 218 ntBASIC20.2■□□□□ 0.82
RFX1P22670 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX1P22670 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.2■□□□□ 0.82
RFX1P22670 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX1P22670 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX1P22670 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RFX1P22670 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX1P22670 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
RFX1P22670 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RFX1P22670 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX1P22670 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX1P22670 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX1P22670 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX1P22670 KRT8P45-201ENST00000414328 1447 ntBASIC20.19■□□□□ 0.82
RFX1P22670 AC112777.1-201ENST00000540175 1423 ntBASIC20.19■□□□□ 0.82
RFX1P22670 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX1P22670 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RFX1P22670 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
RFX1P22670 RCC2P3-201ENST00000418112 1537 ntBASIC20.19■□□□□ 0.82
RFX1P22670 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX1P22670 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX1P22670 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFX1P22670 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.19■□□□□ 0.82
RFX1P22670 CCR12P-201ENST00000446203 998 ntBASIC20.19■□□□□ 0.82
RFX1P22670 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.19■□□□□ 0.82
RFX1P22670 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFX1P22670 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.19■□□□□ 0.82
RFX1P22670 FAM87A-204ENST00000613235 858 ntBASIC20.19■□□□□ 0.82
RFX1P22670 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.19■□□□□ 0.82
RFX1P22670 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RFX1P22670 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RFX1P22670 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.19■□□□□ 0.82
RFX1P22670 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX1P22670 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.19■□□□□ 0.82
RFX1P22670 AL109659.2-201ENST00000606809 1674 ntBASIC20.19■□□□□ 0.82
RFX1P22670 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RFX1P22670 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX1P22670 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX1P22670 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFX1P22670 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RFX1P22670 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX1P22670 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
RFX1P22670 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.18■□□□□ 0.82
RFX1P22670 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.18■□□□□ 0.82
RFX1P22670 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.18■□□□□ 0.82
RFX1P22670 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.18■□□□□ 0.82
RFX1P22670 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.18■□□□□ 0.82
RFX1P22670 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.18■□□□□ 0.82
RFX1P22670 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFX1P22670 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.18■□□□□ 0.82
RFX1P22670 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFX1P22670 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFX1P22670 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX1P22670 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.18■□□□□ 0.82
RFX1P22670 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX1P22670 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFX1P22670 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX1P22670 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX1P22670 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC20.18■□□□□ 0.82
RFX1P22670 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX1P22670 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.18■□□□□ 0.82
RFX1P22670 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.17■□□□□ 0.82
RFX1P22670 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
RFX1P22670 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX1P22670 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX1P22670 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
RFX1P22670 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RFX1P22670 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.17■□□□□ 0.82
RFX1P22670 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RFX1P22670 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
RFX1P22670 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RFX1P22670 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX1P22670 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.17■□□□□ 0.82
RFX1P22670 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
RFX1P22670 AC009947.2-201ENST00000444014 672 ntBASIC20.17■□□□□ 0.82
RFX1P22670 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.17■□□□□ 0.82
RFX1P22670 CA15P1-201ENST00000481698 905 ntBASIC20.17■□□□□ 0.82
RFX1P22670 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RFX1P22670 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.17■□□□□ 0.82
RFX1P22670 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.17■□□□□ 0.82
RFX1P22670 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RFX1P22670 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX1P22670 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RFX1P22670 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX1P22670 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX1P22670 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
RFX1P22670 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RFX1P22670 AC135050.7-201ENST00000624508 2218 ntBASIC20.17■□□□□ 0.82
RFX1P22670 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RFX1P22670 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX1P22670 AL357033.4-201ENST00000617703 1807 ntBASIC20.16■□□□□ 0.82
RFX1P22670 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX1P22670 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.16■□□□□ 0.82
RFX1P22670 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RFX1P22670 AL031133.1-201ENST00000406807 723 ntBASIC20.16■□□□□ 0.82
RFX1P22670 FAM8A6P-201ENST00000407496 1135 ntBASIC20.16■□□□□ 0.82
RFX1P22670 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms