Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.22■□□□□ 0.67
HMGA1P17096 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
HMGA1P17096 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
HMGA1P17096 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 AC099343.3-201ENST00000605834 2503 ntBASIC19.22■□□□□ 0.67
HMGA1P17096 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 MYLKP1-201ENST00000509077 1580 ntBASIC19.22■□□□□ 0.67
HMGA1P17096 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 AL499627.1-201ENST00000569373 2188 ntBASIC19.22■□□□□ 0.67
HMGA1P17096 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.22■□□□□ 0.67
HMGA1P17096 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGA1P17096 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGA1P17096 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGA1P17096 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGA1P17096 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGA1P17096 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGA1P17096 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.21■□□□□ 0.67
HMGA1P17096 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGA1P17096 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGA1P17096 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGA1P17096 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
HMGA1P17096 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGA1P17096 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGA1P17096 UNC93B7-201ENST00000509439 705 ntBASIC19.21■□□□□ 0.67
HMGA1P17096 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.21■□□□□ 0.67
HMGA1P17096 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.21■□□□□ 0.67
HMGA1P17096 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
HMGA1P17096 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGA1P17096 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGA1P17096 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.21■□□□□ 0.67
HMGA1P17096 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.21■□□□□ 0.67
HMGA1P17096 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGA1P17096 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
HMGA1P17096 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGA1P17096 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGA1P17096 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGA1P17096 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.21■□□□□ 0.66
HMGA1P17096 SDHAP2-201ENST00000455183 2001 ntBASIC19.2■□□□□ 0.66
HMGA1P17096 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGA1P17096 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
HMGA1P17096 AC112777.1-201ENST00000540175 1423 ntBASIC19.2■□□□□ 0.66
HMGA1P17096 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.2■□□□□ 0.66
HMGA1P17096 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGA1P17096 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
HMGA1P17096 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGA1P17096 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGA1P17096 AC012615.1-201ENST00000565797 1299 ntBASIC19.2■□□□□ 0.66
HMGA1P17096 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.2■□□□□ 0.66
HMGA1P17096 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.2■□□□□ 0.66
HMGA1P17096 AL592071.1-201ENST00000611956 408 ntBASIC19.2■□□□□ 0.66
HMGA1P17096 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HMGA1P17096 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.2■□□□□ 0.66
HMGA1P17096 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGA1P17096 AC009102.3-201ENST00000623118 1491 ntBASIC19.2■□□□□ 0.66
HMGA1P17096 SLC25A24-204ENST00000569674 2357 ntBASIC19.2■□□□□ 0.66
HMGA1P17096 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGA1P17096 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGA1P17096 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGA1P17096 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGA1P17096 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGA1P17096 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGA1P17096 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGA1P17096 TPM4P1-201ENST00000436100 807 ntBASIC19.19■□□□□ 0.66
HMGA1P17096 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HMGA1P17096 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGA1P17096 AC004263.2-201ENST00000617183 678 ntBASIC19.19■□□□□ 0.66
HMGA1P17096 AL691432.3-201ENST00000621860 400 ntBASIC19.19■□□□□ 0.66
HMGA1P17096 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGA1P17096 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
HMGA1P17096 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGA1P17096 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGA1P17096 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HMGA1P17096 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGA1P17096 AC233702.3-201ENST00000578656 1387 ntBASIC19.19■□□□□ 0.66
HMGA1P17096 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
HMGA1P17096 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.18■□□□□ 0.66
HMGA1P17096 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGA1P17096 TSPY19P-201ENST00000418461 509 ntBASIC19.18■□□□□ 0.66
HMGA1P17096 TSPY18P-201ENST00000441642 509 ntBASIC19.18■□□□□ 0.66
HMGA1P17096 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.18■□□□□ 0.66
HMGA1P17096 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.18■□□□□ 0.66
HMGA1P17096 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 AC124864.1-201ENST00000623408 392 ntBASIC19.18■□□□□ 0.66
HMGA1P17096 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms