Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 AC116351.2-201ENST00000606540 1585 ntBASIC13.96□□□□□ -0.18
HLA-DQA1P01909 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DQA1P01909 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 AL023806.1-201ENST00000603994 1649 ntBASIC13.95□□□□□ -0.18
HLA-DQA1P01909 HACD1-201ENST00000326961 773 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 KRT19P1-201ENST00000405746 1186 ntBASIC13.95□□□□□ -0.18
HLA-DQA1P01909 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 AP001160.3-201ENST00000601484 763 ntBASIC13.95□□□□□ -0.18
HLA-DQA1P01909 MIR6821-201ENST00000617625 74 ntBASIC13.95□□□□□ -0.18
HLA-DQA1P01909 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 SNAI3-AS1-205ENST00000568633 2096 ntBASIC13.95□□□□□ -0.18
HLA-DQA1P01909 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DQA1P01909 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DQA1P01909 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DQA1P01909 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
HLA-DQA1P01909 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DQA1P01909 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC13.94□□□□□ -0.18
HLA-DQA1P01909 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DQA1P01909 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC13.94□□□□□ -0.18
HLA-DQA1P01909 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms