Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19■□□□□ 0.63
TOP3BO95985 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19■□□□□ 0.63
TOP3BO95985 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19■□□□□ 0.63
TOP3BO95985 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19■□□□□ 0.63
TOP3BO95985 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
TOP3BO95985 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19■□□□□ 0.63
TOP3BO95985 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19■□□□□ 0.63
TOP3BO95985 AL359075.1-203ENST00000462729 1002 ntBASIC19■□□□□ 0.63
TOP3BO95985 NME1-207ENST00000480143 964 ntTSL 2 BASIC19■□□□□ 0.63
TOP3BO95985 KRT18P16-201ENST00000510337 1294 ntBASIC19■□□□□ 0.63
TOP3BO95985 AC116407.4-201ENST00000623319 1061 ntBASIC19■□□□□ 0.63
TOP3BO95985 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19■□□□□ 0.63
TOP3BO95985 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
TOP3BO95985 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
TOP3BO95985 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
TOP3BO95985 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
TOP3BO95985 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TOP3BO95985 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
TOP3BO95985 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TOP3BO95985 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TOP3BO95985 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TOP3BO95985 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
TOP3BO95985 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
TOP3BO95985 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
TOP3BO95985 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TOP3BO95985 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TOP3BO95985 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TOP3BO95985 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.99■□□□□ 0.63
TOP3BO95985 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.99■□□□□ 0.63
TOP3BO95985 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TOP3BO95985 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.99■□□□□ 0.63
TOP3BO95985 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TOP3BO95985 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TOP3BO95985 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TOP3BO95985 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
TOP3BO95985 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TOP3BO95985 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TOP3BO95985 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.99■□□□□ 0.63
TOP3BO95985 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TOP3BO95985 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
TOP3BO95985 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.98■□□□□ 0.63
TOP3BO95985 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.98■□□□□ 0.63
TOP3BO95985 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TOP3BO95985 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
TOP3BO95985 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
TOP3BO95985 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.98■□□□□ 0.63
TOP3BO95985 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.98■□□□□ 0.63
TOP3BO95985 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TOP3BO95985 AL671277.2-201ENST00000458060 996 ntBASIC18.98■□□□□ 0.63
TOP3BO95985 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.98■□□□□ 0.63
TOP3BO95985 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.98■□□□□ 0.63
TOP3BO95985 AC026271.3-201ENST00000571884 352 ntBASIC18.98■□□□□ 0.63
TOP3BO95985 AC069148.1-201ENST00000608741 768 ntBASIC18.98■□□□□ 0.63
TOP3BO95985 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.98■□□□□ 0.63
TOP3BO95985 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.98■□□□□ 0.63
TOP3BO95985 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.98■□□□□ 0.63
TOP3BO95985 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.98■□□□□ 0.63
TOP3BO95985 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.98■□□□□ 0.63
TOP3BO95985 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TOP3BO95985 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
TOP3BO95985 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.97■□□□□ 0.63
TOP3BO95985 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
TOP3BO95985 FEM1AP3-201ENST00000403722 1741 ntBASIC18.97■□□□□ 0.63
TOP3BO95985 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TOP3BO95985 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TOP3BO95985 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TOP3BO95985 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TOP3BO95985 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.97■□□□□ 0.63
TOP3BO95985 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TOP3BO95985 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
TOP3BO95985 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms