Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS4BO75351 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
VPS4BO75351 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS4BO75351 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS4BO75351 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 NUDT16P1-203ENST00000513809 620 ntBASIC18.21■□□□□ 0.51
VPS4BO75351 AP000525.1-201ENST00000608286 694 ntBASIC18.21■□□□□ 0.51
VPS4BO75351 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.21■□□□□ 0.51
VPS4BO75351 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS4BO75351 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
VPS4BO75351 RCC2P6-201ENST00000526625 1557 ntBASIC18.21■□□□□ 0.51
VPS4BO75351 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
VPS4BO75351 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4BO75351 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VPS4BO75351 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4BO75351 AC126763.1-201ENST00000552015 2118 ntBASIC18.2■□□□□ 0.5
VPS4BO75351 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4BO75351 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4BO75351 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.2■□□□□ 0.5
VPS4BO75351 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4BO75351 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4BO75351 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4BO75351 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4BO75351 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS4BO75351 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
VPS4BO75351 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS4BO75351 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4BO75351 AP002982.1-201ENST00000492365 877 ntBASIC18.2■□□□□ 0.5
VPS4BO75351 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VPS4BO75351 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS4BO75351 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.2■□□□□ 0.5
VPS4BO75351 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.2■□□□□ 0.5
VPS4BO75351 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4BO75351 NTF6B-201ENST00000591913 560 ntBASIC18.2■□□□□ 0.5
VPS4BO75351 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
VPS4BO75351 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VPS4BO75351 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4BO75351 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4BO75351 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS4BO75351 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS4BO75351 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
VPS4BO75351 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4BO75351 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.19■□□□□ 0.5
VPS4BO75351 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4BO75351 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
VPS4BO75351 KRT8P41-201ENST00000533985 1514 ntBASIC18.19■□□□□ 0.5
VPS4BO75351 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS4BO75351 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4BO75351 TERF1P1-201ENST00000311003 1181 ntBASIC18.19■□□□□ 0.5
VPS4BO75351 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
VPS4BO75351 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS4BO75351 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4BO75351 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
VPS4BO75351 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.19■□□□□ 0.5
VPS4BO75351 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS4BO75351 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS4BO75351 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.19■□□□□ 0.5
VPS4BO75351 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.19■□□□□ 0.5
VPS4BO75351 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4BO75351 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4BO75351 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS4BO75351 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4BO75351 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4BO75351 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4BO75351 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4BO75351 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4BO75351 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS4BO75351 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
VPS4BO75351 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4BO75351 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS4BO75351 KRT8P9-201ENST00000558927 1449 ntBASIC18.18■□□□□ 0.5
VPS4BO75351 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS4BO75351 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS4BO75351 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS4BO75351 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS4BO75351 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS4BO75351 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS4BO75351 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS4BO75351 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS4BO75351 REXO1L10P-201ENST00000615707 1290 ntBASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms