Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
PRKNO60260 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PRKNO60260 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.25■□□□□ 0.35
PRKNO60260 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.25■□□□□ 0.35
PRKNO60260 HOMER2P1-201ENST00000455653 964 ntBASIC17.25■□□□□ 0.35
PRKNO60260 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.25■□□□□ 0.35
PRKNO60260 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
PRKNO60260 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.25■□□□□ 0.35
PRKNO60260 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.25■□□□□ 0.35
PRKNO60260 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.25■□□□□ 0.35
PRKNO60260 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.25■□□□□ 0.35
PRKNO60260 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
PRKNO60260 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.25■□□□□ 0.35
PRKNO60260 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PRKNO60260 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.25■□□□□ 0.35
PRKNO60260 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.25■□□□□ 0.35
PRKNO60260 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
PRKNO60260 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.25■□□□□ 0.35
PRKNO60260 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.25■□□□□ 0.35
PRKNO60260 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.24■□□□□ 0.35
PRKNO60260 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PRKNO60260 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.24■□□□□ 0.35
PRKNO60260 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.24■□□□□ 0.35
PRKNO60260 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 AC087388.1-201ENST00000571370 1112 ntBASIC17.24■□□□□ 0.35
PRKNO60260 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PRKNO60260 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.24■□□□□ 0.35
PRKNO60260 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.24■□□□□ 0.35
PRKNO60260 BX323043.1-201ENST00000641006 1765 ntBASIC17.24■□□□□ 0.35
PRKNO60260 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.24■□□□□ 0.35
PRKNO60260 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKNO60260 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.24■□□□□ 0.35
PRKNO60260 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.23■□□□□ 0.35
PRKNO60260 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PRKNO60260 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.23■□□□□ 0.35
PRKNO60260 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.23■□□□□ 0.35
PRKNO60260 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.23■□□□□ 0.35
PRKNO60260 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 AL031598.1-201ENST00000561511 1773 ntBASIC17.23■□□□□ 0.35
PRKNO60260 AC126763.1-201ENST00000552015 2118 ntBASIC17.23■□□□□ 0.35
PRKNO60260 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PRKNO60260 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 AL020996.1-203ENST00000536896 2307 ntBASIC17.23■□□□□ 0.35
PRKNO60260 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 AC034236.2-201ENST00000606662 1610 ntBASIC17.23■□□□□ 0.35
PRKNO60260 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.23■□□□□ 0.35
PRKNO60260 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 AL031133.1-201ENST00000406807 723 ntBASIC17.23■□□□□ 0.35
PRKNO60260 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.23■□□□□ 0.35
PRKNO60260 LINC01238-205ENST00000567549 1107 ntBASIC17.23■□□□□ 0.35
PRKNO60260 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.23■□□□□ 0.35
PRKNO60260 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
PRKNO60260 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.23■□□□□ 0.35
PRKNO60260 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.23■□□□□ 0.35
PRKNO60260 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.23■□□□□ 0.35
PRKNO60260 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms