Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN3O15551 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.27■□□□□ 0.84
CLDN3O15551 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN3O15551 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.27■□□□□ 0.83
CLDN3O15551 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.27■□□□□ 0.83
CLDN3O15551 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CLDN3O15551 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
CLDN3O15551 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
CLDN3O15551 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN3O15551 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CLDN3O15551 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CLDN3O15551 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN3O15551 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN3O15551 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN3O15551 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.26■□□□□ 0.83
CLDN3O15551 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.26■□□□□ 0.83
CLDN3O15551 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.26■□□□□ 0.83
CLDN3O15551 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN3O15551 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.26■□□□□ 0.83
CLDN3O15551 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.26■□□□□ 0.83
CLDN3O15551 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CLDN3O15551 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.26■□□□□ 0.83
CLDN3O15551 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN3O15551 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CLDN3O15551 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
CLDN3O15551 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN3O15551 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.26■□□□□ 0.83
CLDN3O15551 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN3O15551 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.26■□□□□ 0.83
CLDN3O15551 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.26■□□□□ 0.83
CLDN3O15551 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
CLDN3O15551 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN3O15551 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
CLDN3O15551 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.25■□□□□ 0.83
CLDN3O15551 KRT18P38-201ENST00000449496 1282 ntBASIC20.25■□□□□ 0.83
CLDN3O15551 RASA4DP-201ENST00000460726 1199 ntBASIC20.25■□□□□ 0.83
CLDN3O15551 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.25■□□□□ 0.83
CLDN3O15551 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.25■□□□□ 0.83
CLDN3O15551 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.25■□□□□ 0.83
CLDN3O15551 MIR3917-201ENST00000580971 93 ntBASIC20.25■□□□□ 0.83
CLDN3O15551 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.25■□□□□ 0.83
CLDN3O15551 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CLDN3O15551 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 AC093525.10-201ENST00000625130 1569 ntBASIC20.25■□□□□ 0.83
CLDN3O15551 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CLDN3O15551 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN3O15551 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.24■□□□□ 0.83
CLDN3O15551 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.24■□□□□ 0.83
CLDN3O15551 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CLDN3O15551 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CLDN3O15551 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CLDN3O15551 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.24■□□□□ 0.83
CLDN3O15551 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.24■□□□□ 0.83
CLDN3O15551 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.24■□□□□ 0.83
CLDN3O15551 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.24■□□□□ 0.83
CLDN3O15551 ARMC10P1-201ENST00000313754 855 ntBASIC20.24■□□□□ 0.83
CLDN3O15551 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.24■□□□□ 0.83
CLDN3O15551 AP000593.1-201ENST00000393668 712 ntBASIC20.24■□□□□ 0.83
CLDN3O15551 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.24■□□□□ 0.83
CLDN3O15551 AC010240.3-201ENST00000607688 395 ntBASIC20.24■□□□□ 0.83
CLDN3O15551 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.24■□□□□ 0.83
CLDN3O15551 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.24■□□□□ 0.83
CLDN3O15551 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CLDN3O15551 KRT8P50-201ENST00000562022 1438 ntBASIC20.24■□□□□ 0.83
CLDN3O15551 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CLDN3O15551 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN3O15551 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.23■□□□□ 0.83
CLDN3O15551 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN3O15551 CROCCP3-202ENST00000420820 1947 ntBASIC20.23■□□□□ 0.83
CLDN3O15551 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.23■□□□□ 0.83
CLDN3O15551 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CLDN3O15551 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN3O15551 SPDYE15P-201ENST00000424157 909 ntBASIC20.23■□□□□ 0.83
CLDN3O15551 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.23■□□□□ 0.83
CLDN3O15551 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN3O15551 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN3O15551 AC087388.1-201ENST00000571370 1112 ntBASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms