Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.2■□□□□ 0.5
TMX2-CTNND1H3BSU7 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.2■□□□□ 0.5
TMX2-CTNND1H3BSU7 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.2■□□□□ 0.5
TMX2-CTNND1H3BSU7 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TMX2-CTNND1H3BSU7 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
TMX2-CTNND1H3BSU7 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TMX2-CTNND1H3BSU7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
TMX2-CTNND1H3BSU7 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 TPM4P1-201ENST00000436100 807 ntBASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
TMX2-CTNND1H3BSU7 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 AC083849.1-201ENST00000615227 514 ntBASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 HYMAI.1-201ENST00000620949 238 ntBASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 CR769767.2-201ENST00000622735 460 ntBASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 AL691432.2-201ENST00000607222 2038 ntBASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
TMX2-CTNND1H3BSU7 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
TMX2-CTNND1H3BSU7 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms