Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LRRC53A6NM62 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
LRRC53A6NM62 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
LRRC53A6NM62 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC53A6NM62 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20■□□□□ 0.79
LRRC53A6NM62 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 AC096733.2-201ENST00000609937 1394 ntBASIC20■□□□□ 0.79
LRRC53A6NM62 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
LRRC53A6NM62 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20■□□□□ 0.79
LRRC53A6NM62 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20■□□□□ 0.79
LRRC53A6NM62 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20■□□□□ 0.79
LRRC53A6NM62 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20■□□□□ 0.79
LRRC53A6NM62 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20■□□□□ 0.79
LRRC53A6NM62 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20■□□□□ 0.79
LRRC53A6NM62 CD177P1-201ENST00000606252 935 ntBASIC20■□□□□ 0.79
LRRC53A6NM62 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
LRRC53A6NM62 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20■□□□□ 0.79
LRRC53A6NM62 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
LRRC53A6NM62 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20■□□□□ 0.79
LRRC53A6NM62 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
LRRC53A6NM62 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 GPAT2P1-201ENST00000444924 1672 ntBASIC20■□□□□ 0.79
LRRC53A6NM62 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20■□□□□ 0.79
LRRC53A6NM62 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
LRRC53A6NM62 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRRC53A6NM62 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
LRRC53A6NM62 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 AL023284.2-201ENST00000405850 579 ntBASIC19.99■□□□□ 0.79
LRRC53A6NM62 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC53A6NM62 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.99■□□□□ 0.79
LRRC53A6NM62 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms