Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 AC093458.2-201ENST00000623150 629 ntBASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 KRT8P50-201ENST00000562022 1438 ntBASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 MIR662-201ENST00000384847 95 ntBASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 PVRIG2P-201ENST00000435460 978 ntBASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 AL162741.1-201ENST00000565563 1558 ntBASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC16.5■□□□□ 0.23
CLCF1Q9UBD9 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 AC009065.1-201ENST00000564055 1225 ntBASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.49■□□□□ 0.23
CLCF1Q9UBD9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 AC093525.10-201ENST00000625130 1569 ntBASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 AP000593.1-201ENST00000393668 712 ntBASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 AC011498.5-201ENST00000592027 486 ntBASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms