Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
CHMP1AQ9HD42 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC16■□□□□ 0.15
CHMP1AQ9HD42 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC16■□□□□ 0.15
CHMP1AQ9HD42 AC133041.1-202ENST00000642053 222 ntBASIC16■□□□□ 0.15
CHMP1AQ9HD42 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CHMP1AQ9HD42 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CHMP1AQ9HD42 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16■□□□□ 0.15
CHMP1AQ9HD42 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16■□□□□ 0.15
CHMP1AQ9HD42 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
CHMP1AQ9HD42 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CHMP1AQ9HD42 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 AC067852.2-201ENST00000590513 2313 ntBASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 TK2-208ENST00000545043 1120 ntTSL 2 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 AL109923.1-201ENST00000618799 583 ntBASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC15.99■□□□□ 0.15
CHMP1AQ9HD42 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 TSPY21P-201ENST00000433481 731 ntBASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 MAP2K4P1-201ENST00000438453 1195 ntBASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 RHOD-202ENST00000532559 538 ntTSL 3 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 INO80E-214ENST00000620599 515 ntTSL 2 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 AC083906.6-201ENST00000641366 219 ntBASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHMP1AQ9HD42 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms