Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 AC096733.2-201ENST00000609937 1394 ntBASIC19.21■□□□□ 0.67
PCDH9Q9HC56 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDH9Q9HC56 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 CRYGFP-201ENST00000418459 633 ntBASIC19.2■□□□□ 0.66
PCDH9Q9HC56 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 MFAP1P1-201ENST00000442257 1255 ntBASIC19.2■□□□□ 0.66
PCDH9Q9HC56 TSPY15P-201ENST00000457163 923 ntBASIC19.2■□□□□ 0.66
PCDH9Q9HC56 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 AP000525.1-201ENST00000608286 694 ntBASIC19.2■□□□□ 0.66
PCDH9Q9HC56 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
PCDH9Q9HC56 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 AC005332.8-201ENST00000622750 2735 ntBASIC19.19■□□□□ 0.66
PCDH9Q9HC56 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 AC068880.1-201ENST00000507289 2297 ntBASIC19.19■□□□□ 0.66
PCDH9Q9HC56 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH9Q9HC56 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms