Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 KRT8P7-201ENST00000533003 1432 ntBASIC17.77■□□□□ 0.44
BRF2Q9HAW0 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
BRF2Q9HAW0 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.77■□□□□ 0.43
BRF2Q9HAW0 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
BRF2Q9HAW0 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
BRF2Q9HAW0 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
BRF2Q9HAW0 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
BRF2Q9HAW0 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
BRF2Q9HAW0 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 KRT8P50-201ENST00000562022 1438 ntBASIC17.76■□□□□ 0.43
BRF2Q9HAW0 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 AP003041.3-201ENST00000527151 707 ntBASIC17.76■□□□□ 0.43
BRF2Q9HAW0 AP000525.1-201ENST00000608286 694 ntBASIC17.76■□□□□ 0.43
BRF2Q9HAW0 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.76■□□□□ 0.43
BRF2Q9HAW0 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 AC092338.2-201ENST00000568827 1415 ntBASIC17.75■□□□□ 0.43
BRF2Q9HAW0 HOXB1-202ENST00000577092 1414 ntBASIC17.75■□□□□ 0.43
BRF2Q9HAW0 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.75■□□□□ 0.43
BRF2Q9HAW0 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRF2Q9HAW0 AC036111.1-201ENST00000533973 1582 ntBASIC17.74■□□□□ 0.43
BRF2Q9HAW0 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 SNORA78-201ENST00000459373 127 ntBASIC17.74■□□□□ 0.43
BRF2Q9HAW0 BX088651.1-201ENST00000540551 451 ntBASIC17.74■□□□□ 0.43
BRF2Q9HAW0 C2orf69P3-201ENST00000565542 1120 ntBASIC17.74■□□□□ 0.43
BRF2Q9HAW0 WWOX-216ENST00000569818 525 ntBASIC17.74■□□□□ 0.43
BRF2Q9HAW0 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 AC116562.4-202ENST00000641738 218 ntBASIC17.74■□□□□ 0.43
BRF2Q9HAW0 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.74■□□□□ 0.43
BRF2Q9HAW0 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms