Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.77■□□□□ 0.43
PIF1Q9H611 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PIF1Q9H611 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.76■□□□□ 0.43
PIF1Q9H611 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 AC135776.1-201ENST00000319817 2481 ntBASIC17.76■□□□□ 0.43
PIF1Q9H611 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.76■□□□□ 0.43
PIF1Q9H611 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.76■□□□□ 0.43
PIF1Q9H611 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.76■□□□□ 0.43
PIF1Q9H611 UNC93B5-201ENST00000530315 699 ntBASIC17.76■□□□□ 0.43
PIF1Q9H611 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.76■□□□□ 0.43
PIF1Q9H611 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
PIF1Q9H611 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
PIF1Q9H611 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.76■□□□□ 0.43
PIF1Q9H611 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PIF1Q9H611 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.75■□□□□ 0.43
PIF1Q9H611 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.75■□□□□ 0.43
PIF1Q9H611 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PIF1Q9H611 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 RCC2P6-201ENST00000526625 1557 ntBASIC17.75■□□□□ 0.43
PIF1Q9H611 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.75■□□□□ 0.43
PIF1Q9H611 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.75■□□□□ 0.43
PIF1Q9H611 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.75■□□□□ 0.43
PIF1Q9H611 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.75■□□□□ 0.43
PIF1Q9H611 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.75■□□□□ 0.43
PIF1Q9H611 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.75■□□□□ 0.43
PIF1Q9H611 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.75■□□□□ 0.43
PIF1Q9H611 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.75■□□□□ 0.43
PIF1Q9H611 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.75■□□□□ 0.43
PIF1Q9H611 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
PIF1Q9H611 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.75■□□□□ 0.43
PIF1Q9H611 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PIF1Q9H611 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PIF1Q9H611 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.74■□□□□ 0.43
PIF1Q9H611 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
PIF1Q9H611 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.74■□□□□ 0.43
PIF1Q9H611 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.74■□□□□ 0.43
PIF1Q9H611 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
PIF1Q9H611 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.74■□□□□ 0.43
PIF1Q9H611 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.74■□□□□ 0.43
PIF1Q9H611 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.74■□□□□ 0.43
PIF1Q9H611 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.74■□□□□ 0.43
PIF1Q9H611 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.74■□□□□ 0.43
PIF1Q9H611 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.74■□□□□ 0.43
PIF1Q9H611 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.74■□□□□ 0.43
PIF1Q9H611 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.74■□□□□ 0.43
PIF1Q9H611 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
PIF1Q9H611 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.74■□□□□ 0.43
PIF1Q9H611 AC008764.6-201ENST00000595909 2069 ntBASIC17.74■□□□□ 0.43
PIF1Q9H611 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.74■□□□□ 0.43
PIF1Q9H611 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.74■□□□□ 0.43
PIF1Q9H611 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.74■□□□□ 0.43
PIF1Q9H611 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
PIF1Q9H611 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PIF1Q9H611 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PIF1Q9H611 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.73■□□□□ 0.43
PIF1Q9H611 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.73■□□□□ 0.43
PIF1Q9H611 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PIF1Q9H611 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
PIF1Q9H611 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms