Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 MIR564-202ENST00000385049 94 ntBASIC16.91■□□□□ 0.3
NPAS1Q99742 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 AL137013.1-201ENST00000432946 1228 ntBASIC16.91■□□□□ 0.3
NPAS1Q99742 WWOX-216ENST00000569818 525 ntBASIC16.91■□□□□ 0.3
NPAS1Q99742 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.91■□□□□ 0.3
NPAS1Q99742 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.91■□□□□ 0.3
NPAS1Q99742 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
NPAS1Q99742 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.91■□□□□ 0.3
NPAS1Q99742 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
NPAS1Q99742 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
NPAS1Q99742 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.91■□□□□ 0.3
NPAS1Q99742 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.91■□□□□ 0.3
NPAS1Q99742 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.91■□□□□ 0.3
NPAS1Q99742 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.91■□□□□ 0.3
NPAS1Q99742 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NPAS1Q99742 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NPAS1Q99742 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NPAS1Q99742 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NPAS1Q99742 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.9■□□□□ 0.3
NPAS1Q99742 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NPAS1Q99742 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.9■□□□□ 0.3
NPAS1Q99742 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NPAS1Q99742 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NPAS1Q99742 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.9■□□□□ 0.3
NPAS1Q99742 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.9■□□□□ 0.3
NPAS1Q99742 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.9■□□□□ 0.3
NPAS1Q99742 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.9■□□□□ 0.3
NPAS1Q99742 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
NPAS1Q99742 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NPAS1Q99742 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.9■□□□□ 0.3
NPAS1Q99742 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.9■□□□□ 0.3
NPAS1Q99742 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.9■□□□□ 0.3
NPAS1Q99742 AC141257.4-201ENST00000634557 245 ntBASIC16.9■□□□□ 0.3
NPAS1Q99742 AC136944.6-201ENST00000634818 245 ntBASIC16.9■□□□□ 0.3
NPAS1Q99742 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
NPAS1Q99742 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NPAS1Q99742 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NPAS1Q99742 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.9■□□□□ 0.3
NPAS1Q99742 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
NPAS1Q99742 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NPAS1Q99742 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
NPAS1Q99742 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
NPAS1Q99742 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
NPAS1Q99742 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
NPAS1Q99742 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
NPAS1Q99742 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.89■□□□□ 0.29
NPAS1Q99742 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
NPAS1Q99742 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.89■□□□□ 0.29
NPAS1Q99742 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.89■□□□□ 0.29
NPAS1Q99742 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.89■□□□□ 0.29
NPAS1Q99742 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.89■□□□□ 0.29
NPAS1Q99742 AC006011.2-201ENST00000621313 1158 ntBASIC16.89■□□□□ 0.29
NPAS1Q99742 AL023973.1-201ENST00000624619 620 ntBASIC16.89■□□□□ 0.29
NPAS1Q99742 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.89■□□□□ 0.29
NPAS1Q99742 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.89■□□□□ 0.29
NPAS1Q99742 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
NPAS1Q99742 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.89■□□□□ 0.29
NPAS1Q99742 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
NPAS1Q99742 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NPAS1Q99742 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
NPAS1Q99742 AC104581.1-202ENST00000635932 2618 ntBASIC16.88■□□□□ 0.29
NPAS1Q99742 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NPAS1Q99742 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NPAS1Q99742 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
NPAS1Q99742 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.88■□□□□ 0.29
NPAS1Q99742 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.88■□□□□ 0.29
NPAS1Q99742 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NPAS1Q99742 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.88■□□□□ 0.29
NPAS1Q99742 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NPAS1Q99742 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NPAS1Q99742 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NPAS1Q99742 LIN28AP1-201ENST00000429574 405 ntBASIC16.88■□□□□ 0.29
NPAS1Q99742 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.88■□□□□ 0.29
NPAS1Q99742 AC104076.2-201ENST00000448912 469 ntBASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms