Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
IFT140Q96RY7 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.51
IFT140Q96RY7 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC30.7■■■□□ 2.51
IFT140Q96RY7 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC30.7■■■□□ 2.51
IFT140Q96RY7 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC30.7■■■□□ 2.51
IFT140Q96RY7 MTDHP4-201ENST00000600287 670 ntBASIC30.7■■■□□ 2.51
IFT140Q96RY7 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
IFT140Q96RY7 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.51
IFT140Q96RY7 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
IFT140Q96RY7 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
IFT140Q96RY7 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
IFT140Q96RY7 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
IFT140Q96RY7 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.5
IFT140Q96RY7 Z98044.1-201ENST00000632503 1764 ntBASIC30.7■■■□□ 2.5
IFT140Q96RY7 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
IFT140Q96RY7 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
IFT140Q96RY7 FUOM-202ENST00000368551 628 ntTSL 3 BASIC30.7■■■□□ 2.5
IFT140Q96RY7 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
IFT140Q96RY7 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC30.7■■■□□ 2.5
IFT140Q96RY7 AC068472.1-201ENST00000474589 881 ntBASIC30.7■■■□□ 2.5
IFT140Q96RY7 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC30.7■■■□□ 2.5
IFT140Q96RY7 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC30.7■■■□□ 2.5
IFT140Q96RY7 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
IFT140Q96RY7 RNF151-202ENST00000569210 853 ntTSL 2 BASIC30.7■■■□□ 2.5
IFT140Q96RY7 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC30.7■■■□□ 2.5
IFT140Q96RY7 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC30.7■■■□□ 2.5
IFT140Q96RY7 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
IFT140Q96RY7 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
IFT140Q96RY7 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC30.69■■■□□ 2.5
IFT140Q96RY7 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
IFT140Q96RY7 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
IFT140Q96RY7 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC30.69■■■□□ 2.5
IFT140Q96RY7 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
IFT140Q96RY7 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
IFT140Q96RY7 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC30.69■■■□□ 2.5
IFT140Q96RY7 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC30.69■■■□□ 2.5
IFT140Q96RY7 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
IFT140Q96RY7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC30.69■■■□□ 2.5
IFT140Q96RY7 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
IFT140Q96RY7 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC30.68■■■□□ 2.5
IFT140Q96RY7 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
IFT140Q96RY7 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC30.68■■■□□ 2.5
IFT140Q96RY7 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC30.68■■■□□ 2.5
IFT140Q96RY7 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
IFT140Q96RY7 PNMT-202ENST00000394246 821 ntTSL 2 BASIC30.68■■■□□ 2.5
IFT140Q96RY7 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
IFT140Q96RY7 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC30.68■■■□□ 2.5
IFT140Q96RY7 COX5A-206ENST00000568783 571 ntTSL 3 BASIC30.68■■■□□ 2.5
IFT140Q96RY7 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC30.68■■■□□ 2.5
IFT140Q96RY7 AC239800.4-201ENST00000603712 296 ntBASIC30.68■■■□□ 2.5
IFT140Q96RY7 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC30.68■■■□□ 2.5
IFT140Q96RY7 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC30.68■■■□□ 2.5
IFT140Q96RY7 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
IFT140Q96RY7 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
IFT140Q96RY7 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
IFT140Q96RY7 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
IFT140Q96RY7 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC30.67■■■□□ 2.5
IFT140Q96RY7 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC30.67■■■□□ 2.5
IFT140Q96RY7 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
IFT140Q96RY7 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC30.67■■■□□ 2.5
IFT140Q96RY7 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
IFT140Q96RY7 KRT18P27-201ENST00000427733 1299 ntBASIC30.67■■■□□ 2.5
IFT140Q96RY7 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC30.67■■■□□ 2.5
IFT140Q96RY7 CFL1-202ENST00000524553 860 ntTSL 2 BASIC30.67■■■□□ 2.5
IFT140Q96RY7 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC30.67■■■□□ 2.5
IFT140Q96RY7 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC30.67■■■□□ 2.5
IFT140Q96RY7 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC30.67■■■□□ 2.5
IFT140Q96RY7 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
IFT140Q96RY7 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC30.67■■■□□ 2.5
IFT140Q96RY7 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
IFT140Q96RY7 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC30.67■■■□□ 2.5
IFT140Q96RY7 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC30.66■■■□□ 2.5
IFT140Q96RY7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
IFT140Q96RY7 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
IFT140Q96RY7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC30.66■■■□□ 2.5
IFT140Q96RY7 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
IFT140Q96RY7 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC30.66■■■□□ 2.5
IFT140Q96RY7 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
IFT140Q96RY7 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
IFT140Q96RY7 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC30.66■■■□□ 2.5
IFT140Q96RY7 KRT18P41-201ENST00000518924 1277 ntBASIC30.66■■■□□ 2.5
IFT140Q96RY7 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC30.66■■■□□ 2.5
IFT140Q96RY7 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC30.66■■■□□ 2.5
IFT140Q96RY7 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC30.66■■■□□ 2.5
IFT140Q96RY7 AC092364.2-202ENST00000597012 1073 ntBASIC30.66■■■□□ 2.5
IFT140Q96RY7 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
IFT140Q96RY7 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC30.66■■■□□ 2.5
IFT140Q96RY7 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
IFT140Q96RY7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
IFT140Q96RY7 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC30.66■■■□□ 2.5
IFT140Q96RY7 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
IFT140Q96RY7 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC30.66■■■□□ 2.5
IFT140Q96RY7 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
IFT140Q96RY7 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
IFT140Q96RY7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
IFT140Q96RY7 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC30.65■■■□□ 2.5
IFT140Q96RY7 SPCS2P1-201ENST00000561636 679 ntBASIC30.65■■■□□ 2.5
IFT140Q96RY7 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC30.65■■■□□ 2.5
IFT140Q96RY7 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC30.65■■■□□ 2.5
IFT140Q96RY7 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms