Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LRCH3Q96II8 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.08■□□□□ 0.8
LRCH3Q96II8 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
LRCH3Q96II8 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC20.07■□□□□ 0.8
LRCH3Q96II8 PNMT-202ENST00000394246 821 ntTSL 2 BASIC20.07■□□□□ 0.8
LRCH3Q96II8 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC20.07■□□□□ 0.8
LRCH3Q96II8 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.07■□□□□ 0.8
LRCH3Q96II8 MCCD1P1-208ENST00000445732 328 ntBASIC20.07■□□□□ 0.8
LRCH3Q96II8 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC20.07■□□□□ 0.8
LRCH3Q96II8 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC20.07■□□□□ 0.8
LRCH3Q96II8 MTDHP5-201ENST00000598980 586 ntBASIC20.07■□□□□ 0.8
LRCH3Q96II8 AC114341.1-201ENST00000618070 349 ntBASIC20.07■□□□□ 0.8
LRCH3Q96II8 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.07■□□□□ 0.8
LRCH3Q96II8 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRCH3Q96II8 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 PTMS-202ENST00000389462 773 ntTSL 2 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 CFL1-202ENST00000524553 860 ntTSL 2 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 AC012640.2-201ENST00000561606 901 ntBASIC20.06■□□□□ 0.8
LRCH3Q96II8 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 AP005212.1-201ENST00000581547 1997 ntBASIC20.06■□□□□ 0.8
LRCH3Q96II8 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.06■□□□□ 0.8
LRCH3Q96II8 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.06■□□□□ 0.8
LRCH3Q96II8 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRCH3Q96II8 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.05■□□□□ 0.8
LRCH3Q96II8 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.05■□□□□ 0.8
LRCH3Q96II8 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
LRCH3Q96II8 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC20.05■□□□□ 0.8
LRCH3Q96II8 RPS2P1-201ENST00000434010 821 ntBASIC20.05■□□□□ 0.8
LRCH3Q96II8 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC20.05■□□□□ 0.8
LRCH3Q96II8 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC20.05■□□□□ 0.8
LRCH3Q96II8 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC20.05■□□□□ 0.8
LRCH3Q96II8 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC20.05■□□□□ 0.8
LRCH3Q96II8 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.05■□□□□ 0.8
LRCH3Q96II8 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.05■□□□□ 0.8
LRCH3Q96II8 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC20.05■□□□□ 0.8
LRCH3Q96II8 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LRCH3Q96II8 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRCH3Q96II8 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRCH3Q96II8 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRCH3Q96II8 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 AC006128.1-201ENST00000624704 1661 ntBASIC20.04■□□□□ 0.8
LRCH3Q96II8 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.04■□□□□ 0.8
LRCH3Q96II8 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms