Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHFRQ96EP1 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
CHFRQ96EP1 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.89■□□□□ 0.62
CHFRQ96EP1 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CHFRQ96EP1 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CHFRQ96EP1 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHFRQ96EP1 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.89■□□□□ 0.61
CHFRQ96EP1 Z98044.1-201ENST00000632503 1764 ntBASIC18.89■□□□□ 0.61
CHFRQ96EP1 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHFRQ96EP1 AKR1C7P-201ENST00000305623 895 ntBASIC18.89■□□□□ 0.61
CHFRQ96EP1 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHFRQ96EP1 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHFRQ96EP1 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHFRQ96EP1 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.89■□□□□ 0.61
CHFRQ96EP1 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.89■□□□□ 0.61
CHFRQ96EP1 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.89■□□□□ 0.61
CHFRQ96EP1 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHFRQ96EP1 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHFRQ96EP1 KRT8P50-201ENST00000562022 1438 ntBASIC18.89■□□□□ 0.61
CHFRQ96EP1 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CHFRQ96EP1 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHFRQ96EP1 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHFRQ96EP1 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.89■□□□□ 0.61
CHFRQ96EP1 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.88■□□□□ 0.61
CHFRQ96EP1 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CHFRQ96EP1 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CHFRQ96EP1 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.88■□□□□ 0.61
CHFRQ96EP1 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
CHFRQ96EP1 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CHFRQ96EP1 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.88■□□□□ 0.61
CHFRQ96EP1 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.88■□□□□ 0.61
CHFRQ96EP1 AC024563.2-201ENST00000603282 481 ntBASIC18.88■□□□□ 0.61
CHFRQ96EP1 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.88■□□□□ 0.61
CHFRQ96EP1 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.88■□□□□ 0.61
CHFRQ96EP1 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHFRQ96EP1 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHFRQ96EP1 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHFRQ96EP1 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHFRQ96EP1 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHFRQ96EP1 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CHFRQ96EP1 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHFRQ96EP1 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHFRQ96EP1 MRPL3P1-201ENST00000400109 1033 ntBASIC18.87■□□□□ 0.61
CHFRQ96EP1 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHFRQ96EP1 MTMR9LP-203ENST00000426597 1545 ntBASIC18.87■□□□□ 0.61
CHFRQ96EP1 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHFRQ96EP1 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.87■□□□□ 0.61
CHFRQ96EP1 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.87■□□□□ 0.61
CHFRQ96EP1 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHFRQ96EP1 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.87■□□□□ 0.61
CHFRQ96EP1 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CHFRQ96EP1 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.87■□□□□ 0.61
CHFRQ96EP1 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
CHFRQ96EP1 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.87■□□□□ 0.61
CHFRQ96EP1 AC099336.1-202ENST00000602961 463 ntBASIC18.87■□□□□ 0.61
CHFRQ96EP1 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHFRQ96EP1 AL357033.4-201ENST00000617703 1807 ntBASIC18.87■□□□□ 0.61
CHFRQ96EP1 AC124864.1-201ENST00000623408 392 ntBASIC18.87■□□□□ 0.61
CHFRQ96EP1 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.87■□□□□ 0.61
CHFRQ96EP1 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
CHFRQ96EP1 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.86■□□□□ 0.61
CHFRQ96EP1 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CHFRQ96EP1 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.86■□□□□ 0.61
CHFRQ96EP1 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.86■□□□□ 0.61
CHFRQ96EP1 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.86■□□□□ 0.61
CHFRQ96EP1 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.86■□□□□ 0.61
CHFRQ96EP1 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.86■□□□□ 0.61
CHFRQ96EP1 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.86■□□□□ 0.61
CHFRQ96EP1 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.86■□□□□ 0.61
CHFRQ96EP1 LINC01711-201ENST00000598340 967 ntBASIC18.86■□□□□ 0.61
CHFRQ96EP1 AL353801.3-201ENST00000609898 542 ntBASIC18.86■□□□□ 0.61
CHFRQ96EP1 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.86■□□□□ 0.61
CHFRQ96EP1 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CHFRQ96EP1 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms