Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 AC141586.3-201ENST00000562166 1838 ntBASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 GUSBP12-201ENST00000513727 720 ntBASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.21■□□□□ 0.67
NPAS3Q8IXF0 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 AKR1C7P-201ENST00000305623 895 ntBASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 AP005901.3-202ENST00000581653 237 ntBASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
NPAS3Q8IXF0 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 MRPL3P1-201ENST00000400109 1033 ntBASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 AL662844.1-201ENST00000546340 181 ntBASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 NSUN5P1-202ENST00000421140 1535 ntBASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 NSUN5P2-203ENST00000457352 1529 ntBASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 AL353692.3-201ENST00000407031 1396 ntBASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS3Q8IXF0 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 KRT89P-201ENST00000620027 1478 ntBASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms