Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.58■□□□□ 0.4
RUNDC3AQ59EK9 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RUNDC3AQ59EK9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RUNDC3AQ59EK9 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RUNDC3AQ59EK9 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.58■□□□□ 0.4
RUNDC3AQ59EK9 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RUNDC3AQ59EK9 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RUNDC3AQ59EK9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
RUNDC3AQ59EK9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 RCC2P3-201ENST00000418112 1537 ntBASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 AC138028.4-201ENST00000564984 1845 ntBASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 AC239809.2-201ENST00000415381 517 ntBASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 NIFKP9-201ENST00000419265 221 ntBASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RUNDC3AQ59EK9 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 HTR7P1-201ENST00000538670 1336 ntBASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 MYLKP1-201ENST00000509077 1580 ntBASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RUNDC3AQ59EK9 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 AC133681.1-201ENST00000465482 601 ntBASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 AC090192.1-201ENST00000517740 490 ntBASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 KRT18P41-201ENST00000518924 1277 ntBASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 AC134043.2-201ENST00000624206 2238 ntBASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RUNDC3AQ59EK9 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
RUNDC3AQ59EK9 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RUNDC3AQ59EK9 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RUNDC3AQ59EK9 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms