Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 METTL15-202ENST00000403099 795 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 TSPY23P-201ENST00000440136 739 ntBASIC16.62■□□□□ 0.25
CCDC58Q4VC31 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 GATS-209ENST00000454084 1030 ntTSL 3 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 AL162430.1-201ENST00000480705 870 ntBASIC16.62■□□□□ 0.25
CCDC58Q4VC31 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 AL160286.2-201ENST00000567150 934 ntBASIC16.62■□□□□ 0.25
CCDC58Q4VC31 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.61■□□□□ 0.25
CCDC58Q4VC31 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 AC026185.1-201ENST00000445748 174 ntBASIC16.61■□□□□ 0.25
CCDC58Q4VC31 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 MYC-208ENST00000641036 567 ntBASIC16.61■□□□□ 0.25
CCDC58Q4VC31 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC58Q4VC31 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 MIR663A-201ENST00000385250 93 ntBASIC16.6■□□□□ 0.25
CCDC58Q4VC31 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 CDCA4P2-201ENST00000441182 718 ntBASIC16.6■□□□□ 0.25
CCDC58Q4VC31 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 OR2A1-AS1-207ENST00000486094 819 ntBASIC16.6■□□□□ 0.25
CCDC58Q4VC31 SLC29A4P2-201ENST00000504749 1089 ntBASIC16.6■□□□□ 0.25
CCDC58Q4VC31 PNMA6B-201ENST00000538162 1200 ntBASIC16.6■□□□□ 0.25
CCDC58Q4VC31 RARRES2P6-201ENST00000567333 442 ntBASIC16.6■□□□□ 0.25
CCDC58Q4VC31 AC060766.5-201ENST00000590539 871 ntBASIC16.6■□□□□ 0.25
CCDC58Q4VC31 ANKRD20A6P-201ENST00000618763 204 ntBASIC16.6■□□□□ 0.25
CCDC58Q4VC31 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CCDC58Q4VC31 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
CCDC58Q4VC31 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
CCDC58Q4VC31 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms