Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 AC083849.1-201ENST00000615227 514 ntBASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 STARP1-201ENST00000397973 869 ntBASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 DUSP5P1-201ENST00000441325 1139 ntBASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 MIR4674-201ENST00000582457 87 ntBASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 HYMAI.1-201ENST00000620949 238 ntBASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CCDC144BQ3MJ40 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 HCG4P8-203ENST00000443049 980 ntBASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 ZNF444P1-201ENST00000559497 298 ntBASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 AC069148.1-201ENST00000608741 768 ntBASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC144BQ3MJ40 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC144BQ3MJ40 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 AC104417.2-201ENST00000562989 1793 ntBASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 TEX21P-204ENST00000641479 1693 ntBASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms