Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA4P78363 AL121912.1-201ENST00000603683 238 ntBASIC15.97■□□□□ 0.15
ABCA4P78363 REXO1L6P-202ENST00000619970 1078 ntBASIC15.97■□□□□ 0.15
ABCA4P78363 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
ABCA4P78363 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.97■□□□□ 0.15
ABCA4P78363 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA4P78363 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.97■□□□□ 0.15
ABCA4P78363 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ABCA4P78363 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
ABCA4P78363 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ABCA4P78363 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
ABCA4P78363 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC15.96■□□□□ 0.15
ABCA4P78363 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ABCA4P78363 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC15.96■□□□□ 0.15
ABCA4P78363 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ABCA4P78363 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
ABCA4P78363 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
ABCA4P78363 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.96■□□□□ 0.15
ABCA4P78363 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.96■□□□□ 0.15
ABCA4P78363 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ABCA4P78363 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC15.96■□□□□ 0.15
ABCA4P78363 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.96■□□□□ 0.15
ABCA4P78363 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.96■□□□□ 0.15
ABCA4P78363 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC15.96■□□□□ 0.15
ABCA4P78363 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ABCA4P78363 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ABCA4P78363 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
ABCA4P78363 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC15.96■□□□□ 0.15
ABCA4P78363 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
ABCA4P78363 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
ABCA4P78363 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
ABCA4P78363 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC15.96■□□□□ 0.15
ABCA4P78363 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC15.96■□□□□ 0.15
ABCA4P78363 TREX1-205ENST00000625293 1783 ntBASIC15.96■□□□□ 0.15
ABCA4P78363 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
ABCA4P78363 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
ABCA4P78363 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
ABCA4P78363 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
ABCA4P78363 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
ABCA4P78363 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.96■□□□□ 0.14
ABCA4P78363 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
ABCA4P78363 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC15.96■□□□□ 0.14
ABCA4P78363 AL390719.2-201ENST00000606993 987 ntBASIC15.96■□□□□ 0.14
ABCA4P78363 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.96■□□□□ 0.14
ABCA4P78363 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
ABCA4P78363 AL512353.2-201ENST00000448759 1962 ntBASIC15.96■□□□□ 0.14
ABCA4P78363 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
ABCA4P78363 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
ABCA4P78363 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC15.95■□□□□ 0.14
ABCA4P78363 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC15.95■□□□□ 0.14
ABCA4P78363 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC15.95■□□□□ 0.14
ABCA4P78363 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC15.95■□□□□ 0.14
ABCA4P78363 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC15.95■□□□□ 0.14
ABCA4P78363 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC15.95■□□□□ 0.14
ABCA4P78363 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.95■□□□□ 0.14
ABCA4P78363 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.95■□□□□ 0.14
ABCA4P78363 ABR-204ENST00000543210 1049 ntTSL 2 BASIC15.95■□□□□ 0.14
ABCA4P78363 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC15.95■□□□□ 0.14
ABCA4P78363 Z69720.1-201ENST00000601483 472 ntBASIC15.95■□□□□ 0.14
ABCA4P78363 AC138894.3-201ENST00000603787 634 ntBASIC15.95■□□□□ 0.14
ABCA4P78363 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
ABCA4P78363 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.94■□□□□ 0.14
ABCA4P78363 IGHGP-201ENST00000390555 1178 ntBASIC15.94■□□□□ 0.14
ABCA4P78363 FAM220CP-201ENST00000395253 831 ntBASIC15.94■□□□□ 0.14
ABCA4P78363 MIR1233-2-201ENST00000408138 82 ntBASIC15.94■□□□□ 0.14
ABCA4P78363 MIR1233-1-201ENST00000408722 82 ntBASIC15.94■□□□□ 0.14
ABCA4P78363 AL590627.1-203ENST00000421194 1026 ntBASIC15.94■□□□□ 0.14
ABCA4P78363 HMGN1P19-201ENST00000436976 333 ntBASIC15.94■□□□□ 0.14
ABCA4P78363 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.94■□□□□ 0.14
ABCA4P78363 KRT18P41-201ENST00000518924 1277 ntBASIC15.94■□□□□ 0.14
ABCA4P78363 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.94■□□□□ 0.14
ABCA4P78363 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.94■□□□□ 0.14
ABCA4P78363 AC006333.2-201ENST00000607957 2099 ntBASIC15.94■□□□□ 0.14
ABCA4P78363 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
ABCA4P78363 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
ABCA4P78363 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 IRX1P1-201ENST00000438849 1838 ntBASIC15.94■□□□□ 0.14
ABCA4P78363 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
ABCA4P78363 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms