Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF4P78317 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF4P78317 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF4P78317 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF4P78317 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF4P78317 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RNF4P78317 KRT18P38-201ENST00000449496 1282 ntBASIC17.19■□□□□ 0.34
RNF4P78317 RASA4DP-201ENST00000460726 1199 ntBASIC17.19■□□□□ 0.34
RNF4P78317 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.19■□□□□ 0.34
RNF4P78317 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RNF4P78317 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF4P78317 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.19■□□□□ 0.34
RNF4P78317 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF4P78317 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
RNF4P78317 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF4P78317 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.19■□□□□ 0.34
RNF4P78317 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RNF4P78317 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF4P78317 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF4P78317 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF4P78317 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.19■□□□□ 0.34
RNF4P78317 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF4P78317 AC018445.3-201ENST00000624177 1945 ntBASIC17.19■□□□□ 0.34
RNF4P78317 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
RNF4P78317 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF4P78317 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF4P78317 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF4P78317 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RNF4P78317 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF4P78317 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.18■□□□□ 0.34
RNF4P78317 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF4P78317 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF4P78317 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF4P78317 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
RNF4P78317 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
RNF4P78317 ARMC10P1-201ENST00000313754 855 ntBASIC17.18■□□□□ 0.34
RNF4P78317 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF4P78317 AP000593.1-201ENST00000393668 712 ntBASIC17.18■□□□□ 0.34
RNF4P78317 SPDYE15P-201ENST00000424157 909 ntBASIC17.18■□□□□ 0.34
RNF4P78317 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.18■□□□□ 0.34
RNF4P78317 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF4P78317 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF4P78317 MIR3917-201ENST00000580971 93 ntBASIC17.18■□□□□ 0.34
RNF4P78317 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.18■□□□□ 0.34
RNF4P78317 AC010240.3-201ENST00000607688 395 ntBASIC17.18■□□□□ 0.34
RNF4P78317 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RNF4P78317 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.18■□□□□ 0.34
RNF4P78317 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF4P78317 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
RNF4P78317 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.18■□□□□ 0.34
RNF4P78317 AC093525.10-201ENST00000625130 1569 ntBASIC17.18■□□□□ 0.34
RNF4P78317 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF4P78317 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF4P78317 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF4P78317 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF4P78317 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF4P78317 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF4P78317 BX323043.1-201ENST00000641006 1765 ntBASIC17.17■□□□□ 0.34
RNF4P78317 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.17■□□□□ 0.34
RNF4P78317 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
RNF4P78317 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.17■□□□□ 0.34
RNF4P78317 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
RNF4P78317 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.17■□□□□ 0.34
RNF4P78317 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.17■□□□□ 0.34
RNF4P78317 AC112907.2-201ENST00000448639 330 ntBASIC17.17■□□□□ 0.34
RNF4P78317 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 KRT8P50-201ENST00000562022 1438 ntBASIC17.17■□□□□ 0.34
RNF4P78317 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 AC087388.1-201ENST00000571370 1112 ntBASIC17.17■□□□□ 0.34
RNF4P78317 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.17■□□□□ 0.34
RNF4P78317 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.17■□□□□ 0.34
RNF4P78317 MYC-208ENST00000641036 567 ntBASIC17.17■□□□□ 0.34
RNF4P78317 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
RNF4P78317 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RNF4P78317 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
RNF4P78317 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
RNF4P78317 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.16■□□□□ 0.34
RNF4P78317 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.16■□□□□ 0.34
RNF4P78317 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.16■□□□□ 0.34
RNF4P78317 MIR3180-4-201ENST00000582223 153 ntBASIC17.16■□□□□ 0.34
RNF4P78317 AL157888.1-201ENST00000631930 593 ntBASIC17.16■□□□□ 0.34
RNF4P78317 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms