Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.32■□□□□ 0.52
SRP54P61011 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.32■□□□□ 0.52
SRP54P61011 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SRP54P61011 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SRP54P61011 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SRP54P61011 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SRP54P61011 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SRP54P61011 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SRP54P61011 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SRP54P61011 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SRP54P61011 AC006333.2-201ENST00000607957 2099 ntBASIC18.31■□□□□ 0.52
SRP54P61011 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.31■□□□□ 0.52
SRP54P61011 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SRP54P61011 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SRP54P61011 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.31■□□□□ 0.52
SRP54P61011 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SRP54P61011 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.31■□□□□ 0.52
SRP54P61011 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.31■□□□□ 0.52
SRP54P61011 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.31■□□□□ 0.52
SRP54P61011 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.31■□□□□ 0.52
SRP54P61011 AC010240.3-201ENST00000607688 395 ntBASIC18.31■□□□□ 0.52
SRP54P61011 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.31■□□□□ 0.52
SRP54P61011 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.31■□□□□ 0.52
SRP54P61011 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SRP54P61011 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SRP54P61011 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.31■□□□□ 0.52
SRP54P61011 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SRP54P61011 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SRP54P61011 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SRP54P61011 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
SRP54P61011 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.31■□□□□ 0.52
SRP54P61011 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SRP54P61011 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SRP54P61011 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SRP54P61011 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.3■□□□□ 0.52
SRP54P61011 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SRP54P61011 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SRP54P61011 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SRP54P61011 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.3■□□□□ 0.52
SRP54P61011 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SRP54P61011 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.3■□□□□ 0.52
SRP54P61011 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.3■□□□□ 0.52
SRP54P61011 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.3■□□□□ 0.52
SRP54P61011 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SRP54P61011 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.3■□□□□ 0.52
SRP54P61011 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.3■□□□□ 0.52
SRP54P61011 KRT18P56-201ENST00000507275 550 ntBASIC18.3■□□□□ 0.52
SRP54P61011 AL136038.4-201ENST00000603606 1261 ntBASIC18.3■□□□□ 0.52
SRP54P61011 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.3■□□□□ 0.52
SRP54P61011 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.3■□□□□ 0.52
SRP54P61011 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.3■□□□□ 0.52
SRP54P61011 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
SRP54P61011 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SRP54P61011 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SRP54P61011 AC087289.5-201ENST00000586076 3175 ntBASIC18.3■□□□□ 0.52
SRP54P61011 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.3■□□□□ 0.52
SRP54P61011 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SRP54P61011 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.3■□□□□ 0.52
SRP54P61011 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SRP54P61011 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 AL391807.1-203ENST00000604392 2365 ntBASIC18.29■□□□□ 0.52
SRP54P61011 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
SRP54P61011 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SRP54P61011 HLA-F-220ENST00000434407 884 ntBASIC18.29■□□□□ 0.52
SRP54P61011 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SRP54P61011 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.29■□□□□ 0.52
SRP54P61011 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.29■□□□□ 0.52
SRP54P61011 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.29■□□□□ 0.52
SRP54P61011 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.29■□□□□ 0.52
SRP54P61011 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.29■□□□□ 0.52
SRP54P61011 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SRP54P61011 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SRP54P61011 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.29■□□□□ 0.52
SRP54P61011 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SRP54P61011 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.29■□□□□ 0.52
SRP54P61011 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SRP54P61011 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SRP54P61011 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.28■□□□□ 0.52
SRP54P61011 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SRP54P61011 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SRP54P61011 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SRP54P61011 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.28■□□□□ 0.52
SRP54P61011 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SRP54P61011 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms