Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC13.97□□□□□ -0.17
FOXA3P55318 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA3P55318 SP2-202ENST00000613139 908 ntTSL 5 BASIC13.97□□□□□ -0.17
FOXA3P55318 RAB43-208ENST00000615093 783 ntTSL 5 BASIC13.97□□□□□ -0.17
FOXA3P55318 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
FOXA3P55318 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA3P55318 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
FOXA3P55318 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
FOXA3P55318 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA3P55318 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
FOXA3P55318 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA3P55318 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 AC012317.2-201ENST00000623305 2251 ntBASIC13.97□□□□□ -0.17
FOXA3P55318 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC13.96□□□□□ -0.17
FOXA3P55318 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC13.96□□□□□ -0.17
FOXA3P55318 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA3P55318 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC13.96□□□□□ -0.17
FOXA3P55318 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC13.96□□□□□ -0.17
FOXA3P55318 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC13.96□□□□□ -0.17
FOXA3P55318 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC13.96□□□□□ -0.17
FOXA3P55318 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA3P55318 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC13.96□□□□□ -0.17
FOXA3P55318 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA3P55318 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC13.96□□□□□ -0.18
FOXA3P55318 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
FOXA3P55318 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA3P55318 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA3P55318 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA3P55318 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA3P55318 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
FOXA3P55318 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA3P55318 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA3P55318 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC13.96□□□□□ -0.18
FOXA3P55318 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA3P55318 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
FOXA3P55318 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
FOXA3P55318 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
FOXA3P55318 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
FOXA3P55318 AL139384.1-201ENST00000612143 3047 ntBASIC13.95□□□□□ -0.18
FOXA3P55318 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
FOXA3P55318 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA3P55318 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC13.95□□□□□ -0.18
FOXA3P55318 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
FOXA3P55318 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
FOXA3P55318 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA3P55318 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC13.95□□□□□ -0.18
FOXA3P55318 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA3P55318 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC13.95□□□□□ -0.18
FOXA3P55318 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
FOXA3P55318 AC068338.2-201ENST00000563278 1430 ntBASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms