Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC15.23■□□□□ 0.03
NKX2-1P43699 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC15.23■□□□□ 0.03
NKX2-1P43699 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC15.23■□□□□ 0.03
NKX2-1P43699 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
NKX2-1P43699 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-1P43699 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
NKX2-1P43699 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-1P43699 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-1P43699 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-1P43699 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-1P43699 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-1P43699 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
NKX2-1P43699 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-1P43699 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-1P43699 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-1P43699 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC15.23■□□□□ 0.03
NKX2-1P43699 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC15.22■□□□□ 0.03
NKX2-1P43699 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
NKX2-1P43699 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC15.22■□□□□ 0.03
NKX2-1P43699 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.22■□□□□ 0.03
NKX2-1P43699 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC15.22■□□□□ 0.03
NKX2-1P43699 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
NKX2-1P43699 TSPY23P-201ENST00000440136 739 ntBASIC15.22■□□□□ 0.03
NKX2-1P43699 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC15.22■□□□□ 0.03
NKX2-1P43699 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC15.22■□□□□ 0.03
NKX2-1P43699 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.22■□□□□ 0.03
NKX2-1P43699 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
NKX2-1P43699 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
NKX2-1P43699 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC15.22■□□□□ 0.03
NKX2-1P43699 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.22■□□□□ 0.03
NKX2-1P43699 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-1P43699 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.22■□□□□ 0.03
NKX2-1P43699 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
NKX2-1P43699 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-1P43699 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
NKX2-1P43699 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
NKX2-1P43699 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-1P43699 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC15.21■□□□□ 0.03
NKX2-1P43699 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX2-1P43699 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
NKX2-1P43699 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC15.21■□□□□ 0.03
NKX2-1P43699 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
NKX2-1P43699 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-1P43699 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC15.21■□□□□ 0.03
NKX2-1P43699 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC15.21■□□□□ 0.03
NKX2-1P43699 GLI3-203ENST00000437480 451 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX2-1P43699 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX2-1P43699 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC15.21■□□□□ 0.03
NKX2-1P43699 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC15.21■□□□□ 0.03
NKX2-1P43699 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC15.21■□□□□ 0.03
NKX2-1P43699 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX2-1P43699 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
NKX2-1P43699 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX2-1P43699 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
NKX2-1P43699 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
NKX2-1P43699 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-1P43699 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-1P43699 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-1P43699 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX2-1P43699 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC15.21■□□□□ 0.02
NKX2-1P43699 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX2-1P43699 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.21■□□□□ 0.02
NKX2-1P43699 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
NKX2-1P43699 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
NKX2-1P43699 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
NKX2-1P43699 FLYWCH1P1-201ENST00000460917 1874 ntBASIC15.2■□□□□ 0.02
NKX2-1P43699 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
NKX2-1P43699 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
NKX2-1P43699 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
NKX2-1P43699 PNN-205ENST00000556530 601 ntTSL 2 BASIC15.2■□□□□ 0.02
NKX2-1P43699 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC15.2■□□□□ 0.02
NKX2-1P43699 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
NKX2-1P43699 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-1P43699 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.2■□□□□ 0.02
NKX2-1P43699 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms