Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC107918.4-202ENST00000641623 219 ntBASIC21.93■■□□□ 1.1
SCN4AP35499 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SCN4AP35499 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SCN4AP35499 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SCN4AP35499 AC002310.6-201ENST00000624451 1377 ntBASIC21.93■■□□□ 1.1
SCN4AP35499 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SCN4AP35499 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SCN4AP35499 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.93■■□□□ 1.1
SCN4AP35499 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
SCN4AP35499 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SCN4AP35499 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SCN4AP35499 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SCN4AP35499 MCCD1P2-201ENST00000423228 335 ntBASIC21.92■■□□□ 1.1
SCN4AP35499 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SCN4AP35499 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC21.92■■□□□ 1.1
SCN4AP35499 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC21.92■■□□□ 1.1
SCN4AP35499 AP002414.3-201ENST00000589352 1468 ntBASIC21.92■■□□□ 1.1
SCN4AP35499 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.92■■□□□ 1.1
SCN4AP35499 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC21.92■■□□□ 1.1
SCN4AP35499 AC105339.3-201ENST00000560043 636 ntBASIC21.92■■□□□ 1.1
SCN4AP35499 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC21.92■■□□□ 1.1
SCN4AP35499 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SCN4AP35499 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SCN4AP35499 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
SCN4AP35499 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.91■■□□□ 1.1
SCN4AP35499 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.91■■□□□ 1.1
SCN4AP35499 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
SCN4AP35499 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
SCN4AP35499 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SCN4AP35499 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SCN4AP35499 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SCN4AP35499 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.91■■□□□ 1.1
SCN4AP35499 Z98044.1-201ENST00000632503 1764 ntBASIC21.91■■□□□ 1.1
SCN4AP35499 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SCN4AP35499 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SCN4AP35499 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC21.91■■□□□ 1.1
SCN4AP35499 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SCN4AP35499 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SCN4AP35499 FAM8A3P-201ENST00000427218 844 ntBASIC21.91■■□□□ 1.1
SCN4AP35499 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC21.91■■□□□ 1.1
SCN4AP35499 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SCN4AP35499 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC21.91■■□□□ 1.1
SCN4AP35499 YBX1P5-201ENST00000509441 847 ntBASIC21.91■■□□□ 1.1
SCN4AP35499 KRT18P41-201ENST00000518924 1277 ntBASIC21.91■■□□□ 1.1
SCN4AP35499 AC011467.4-201ENST00000594891 528 ntBASIC21.91■■□□□ 1.1
SCN4AP35499 AL596442.2-201ENST00000610240 980 ntBASIC21.91■■□□□ 1.1
SCN4AP35499 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC21.91■■□□□ 1.1
SCN4AP35499 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.91■■□□□ 1.1
SCN4AP35499 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SCN4AP35499 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
SCN4AP35499 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SCN4AP35499 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.9■■□□□ 1.1
SCN4AP35499 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC21.9■■□□□ 1.1
SCN4AP35499 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
SCN4AP35499 KRT18P28-201ENST00000453838 1332 ntBASIC21.9■■□□□ 1.1
SCN4AP35499 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.9■■□□□ 1.1
SCN4AP35499 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.9■■□□□ 1.1
SCN4AP35499 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
SCN4AP35499 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC21.9■■□□□ 1.1
SCN4AP35499 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC21.9■■□□□ 1.1
SCN4AP35499 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 LINC01521-201ENST00000504184 1943 ntBASIC21.9■■□□□ 1.1
SCN4AP35499 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC21.9■■□□□ 1.1
SCN4AP35499 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SCN4AP35499 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC21.9■■□□□ 1.1
SCN4AP35499 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC21.9■■□□□ 1.1
SCN4AP35499 AC009947.1-201ENST00000444350 727 ntBASIC21.9■■□□□ 1.1
SCN4AP35499 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
SCN4AP35499 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC21.9■■□□□ 1.1
SCN4AP35499 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC21.9■■□□□ 1.1
SCN4AP35499 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC21.9■■□□□ 1.1
SCN4AP35499 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC21.9■■□□□ 1.1
SCN4AP35499 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
SCN4AP35499 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC21.9■■□□□ 1.1
SCN4AP35499 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
SCN4AP35499 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SCN4AP35499 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SCN4AP35499 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SCN4AP35499 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SCN4AP35499 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC21.89■■□□□ 1.09
SCN4AP35499 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC21.89■■□□□ 1.09
SCN4AP35499 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC21.89■■□□□ 1.09
SCN4AP35499 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC21.89■■□□□ 1.09
SCN4AP35499 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SCN4AP35499 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SCN4AP35499 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.89■■□□□ 1.09
SCN4AP35499 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SCN4AP35499 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SCN4AP35499 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms