Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.66■□□□□ 0.58
PTPN4P29074 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
PTPN4P29074 AC012306.2-201ENST00000609350 630 ntBASIC18.66■□□□□ 0.58
PTPN4P29074 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.66■□□□□ 0.58
PTPN4P29074 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.66■□□□□ 0.58
PTPN4P29074 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.66■□□□□ 0.58
PTPN4P29074 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
PTPN4P29074 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 ESPNP-201ENST00000270691 2015 ntBASIC18.66■□□□□ 0.58
PTPN4P29074 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PTPN4P29074 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.66■□□□□ 0.58
PTPN4P29074 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.66■□□□□ 0.58
PTPN4P29074 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
PTPN4P29074 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PTPN4P29074 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PTPN4P29074 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.65■□□□□ 0.58
PTPN4P29074 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.65■□□□□ 0.58
PTPN4P29074 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.65■□□□□ 0.58
PTPN4P29074 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.65■□□□□ 0.58
PTPN4P29074 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
PTPN4P29074 MMP23A-201ENST00000234610 1017 ntBASIC18.65■□□□□ 0.58
PTPN4P29074 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
PTPN4P29074 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.65■□□□□ 0.58
PTPN4P29074 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.65■□□□□ 0.58
PTPN4P29074 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.65■□□□□ 0.58
PTPN4P29074 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PTPN4P29074 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PTPN4P29074 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
PTPN4P29074 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PTPN4P29074 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN4P29074 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PTPN4P29074 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PTPN4P29074 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.58
PTPN4P29074 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PTPN4P29074 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.64■□□□□ 0.57
PTPN4P29074 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.64■□□□□ 0.57
PTPN4P29074 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.64■□□□□ 0.57
PTPN4P29074 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 NUDT16P1-203ENST00000513809 620 ntBASIC18.64■□□□□ 0.57
PTPN4P29074 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.64■□□□□ 0.57
PTPN4P29074 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.64■□□□□ 0.57
PTPN4P29074 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.64■□□□□ 0.57
PTPN4P29074 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN4P29074 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
PTPN4P29074 ZNF815P-204ENST00000434898 1737 ntBASIC18.63■□□□□ 0.57
PTPN4P29074 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.63■□□□□ 0.57
PTPN4P29074 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.63■□□□□ 0.57
PTPN4P29074 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PTPN4P29074 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.63■□□□□ 0.57
PTPN4P29074 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.63■□□□□ 0.57
PTPN4P29074 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms